View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_84 (Length: 208)
Name: NF20058_low_84
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_84 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 42578331 - 42578529
Alignment:
| Q |
1 |
acaactaccctcacaacactaacccctttctcaaacagaattcaatccactcttttgcagcttaattcatcccactctaaaccatatagtaacttcctga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42578331 |
acaactaccctcacaacactaacccctttctcaaacagaattcaacccactcttttgcagcttaattcatcccactctaaaccatatagtaacttcctga |
42578430 |
T |
|
| Q |
101 |
ctttaatttcctcaaaatatctgggtttgcatgctatccctttcttacaccctataaatccataagattgtttcacgactcttagaagttcatattctt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42578431 |
ctttaatttcctcaaaatatctgggtttgcatgctatccctttcttacaccctataaatccataagattgtttcacgactcttagaagttcattttctt |
42578529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 42574677 - 42574786
Alignment:
| Q |
35 |
acagaattcaatccactcttttgcagcttaattcatcccactctaaaccatatagt-aacttcctgactttaatttcctcaaaatatctgggtttgcatg |
133 |
Q |
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||||||| ||| ||||| ||||||||||||| |||||| ||| |||||||| |||| |||||||||||||||| ||||||||||||| || ||||||||| |
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| T |
42574677 |
acagaatgcaacccactgttttgcagcttaactcatcctactttaaaccatttagtcaacttcctgactttaagttcctcaaaatatttgagtttgcatg |
42574776 |
T |
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| Q |
134 |
ctatcccttt |
143 |
Q |
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|||||||||| |
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| T |
42574777 |
ctatcccttt |
42574786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 42609251 - 42609331
Alignment:
| Q |
91 |
aacttcctgactttaatttcctcaaaatatctgggtttgcatgctatccctttcttacaccctataaatccataagattgt |
171 |
Q |
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|||||||||||| || ||||||||||| | |||||||||| ||| ||||||| ||| ||||| | | ||| ||||||||| |
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| T |
42609251 |
aacttcctgactacaagttcctcaaaatgtttgggtttgcaagctttccctttgttagaccctttcattccgtaagattgt |
42609331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 27869065 - 27868965
Alignment:
| Q |
47 |
ccactcttttgcagcttaattcatcccactctaaaccatatagt-aacttcctgactttaatttcctcaaaatatctgggtttgcatgctatccctttct |
145 |
Q |
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||||| ||||||||||||| |||| | ||| ||||| | || | |||||||||||| || ||||| ||||| || ||||||||||||||||||||||| |
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| T |
27869065 |
ccactgttttgcagcttaactcattctactataaactgtttaatcaacttcctgactacaagttcctaaaaatttcagggtttgcatgctatccctttct |
27868966 |
T |
|
| Q |
146 |
t |
146 |
Q |
| |
|
| |
|
|
| T |
27868965 |
t |
27868965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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