View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2005_high_3 (Length: 325)

Name: NF2005_high_3
Description: NF2005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2005_high_3
NF2005_high_3
[»] chr7 (11 HSPs)
chr7 (19-312)||(4631379-4631672)
chr7 (22-309)||(4667396-4667671)
chr7 (178-240)||(4637378-4637440)
chr7 (178-240)||(4711584-4711646)
chr7 (178-240)||(4864446-4864508)
chr7 (176-253)||(4654004-4654081)
chr7 (178-242)||(4696702-4696766)
chr7 (179-242)||(4644214-4644277)
chr7 (184-253)||(4783353-4783422)
chr7 (184-253)||(4815782-4815851)
chr7 (176-240)||(4673224-4673288)
[»] chr4 (1 HSPs)
chr4 (24-312)||(18925109-18925385)


Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 4631672 - 4631379
Alignment:
Q  19 caatggccctatttttcttcgcctctatttttacccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaacc 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631672 caatggccctatttttcttcgcctctatttttatccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaacc 4631573  T
Q  119 aaccttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgaga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631572 aaccttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgaga 4631473  T
Q  219 agctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgccttc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631472 agctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgccttc 4631379  T

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Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 22 - 309
Target Start/End: Complemental strand, 4667671 - 4667396
Alignment:
Q  22 tggccctatttttcttcgcctctatttttacccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaac 121  Q
    ||||||| |||||||||||||| ||||||||||||||||||||      ||| || |||||||||||||||| |||||||||||||||||||||||||||    
T  4667671 tggccctgtttttcttcgcctccatttttacccaacatcgtat------caaaactttgaaacctccaacgctctcttcacagtcaaagtaggaaccaac 4667578  T
Q  122 cttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagc 221  Q
    ||||||||||||||||||||||  || || ||||||||| ||||||||| ||||||||||||||||||||||||||| || |     | |   ||||| |    
T  4667577 cttacccttctcaaagactttagcccttcactttggcttccaaacgataacaagacaatcaccaaagaatattgcatccataccaaacaaggggagaaac 4667478  T
Q  222 taaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgcc 309  Q
    || || ||||||||||||||||      |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  4667477 tagacgtaactttcattcccaa------aaacacaaaccaattaaatgcttttgctttcatcaacggaattgagattgtgtctatgcc 4667396  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 4637440 - 4637378
Alignment:
Q  178 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 240  Q
    |||||||||||||||||||||||||||    |||||||| ||| |||||||||||||||||||    
T  4637440 aatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcc 4637378  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 4711584 - 4711646
Alignment:
Q  178 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 240  Q
    ||||||||||||||||||||| |||||    |||||||||||||||| |||||||||||||||    
T  4711584 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 4711646  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 4864508 - 4864446
Alignment:
Q  178 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 240  Q
    ||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||    
T  4864508 aatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattcc 4864446  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 253
Target Start/End: Complemental strand, 4654081 - 4654004
Alignment:
Q  176 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 253  Q
    ||||||||||||||||||||||| ||| |    || ||| |||||||||||||||||||||||||||| || ||||||    
T  4654081 acaatcaccaaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaacaacacaaac 4654004  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 4696702 - 4696766
Alignment:
Q  178 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 242  Q
    ||||||||||||||||||||| ||||     |||||||||||| |||||||||||||||||||||    
T  4696702 aatcaccaaagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattccca 4696766  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 4644277 - 4644214
Alignment:
Q  179 atcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 242  Q
    |||| |||||| |||||||| ||||||    |||||||||||||||||||||||||||||||||    
T  4644277 atcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattccca 4644214  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 4783353 - 4783422
Alignment:
Q  184 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 253  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  4783353 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaac 4783422  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 4815782 - 4815851
Alignment:
Q  184 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 253  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  4815782 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaac 4815851  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 4673288 - 4673224
Alignment:
Q  176 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 240  Q
    |||||||||||||||| ||| || |||||    || ||||||||||||||||||| |||||||||    
T  4673288 acaatcaccaaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattcc 4673224  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 312
Target Start/End: Original strand, 18925109 - 18925385
Alignment:
Q  24 gccctatttttcttcgcctctatttttacccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaacct 123  Q
    |||||||||||||||||||  ||||||||||||||||||||      ||| || ||||||||| | ||||||||||||| |||||||| ||||||||  |    
T  18925109 gccctatttttcttcgccttcatttttacccaacatcgtat------caaaactttgaaaccttcgacgccctcttcaccgtcaaagttggaaccaatgt 18925202  T
Q  124 tacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagcta 223  Q
     ||||||||||| |||||||| ||| | |||||||||  |||||||| |||||||||||| ||||| || ||| |  ||||    |||| ||||||| ||    
T  18925203 cacccttctcaatgactttaaccccgcactttggcttcaaaacgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaactgagaagtta 18925302  T
Q  224 aacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgccttc 312  Q
    || ||||||||||||||   ||| ||   || ||| |||  ||| | ||  ||||||||||||||||||||||| ||||| ||||||||    
T  18925303 aatataactttcattcc---aaacac---cataaatcaaccaaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttc 18925385  T

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