View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2005_low_1 (Length: 584)
Name: NF2005_low_1
Description: NF2005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2005_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 490; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 13 - 566
Target Start/End: Original strand, 16757896 - 16758449
Alignment:
| Q |
13 |
aatatggaggaaagtatgtacatgaagagacatgaaccatacggagaaaagaggacaatgacgatggaatttagaaaatgcatcgactctgctaaatgaa |
112 |
Q |
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| T |
16757896 |
aatatggaggaaagaatgttcatgaagagacatgaacaatatggagaaaagaggacaatgacgatggaatttagaaaatacatcgactctgctaaatgaa |
16757995 |
T |
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| Q |
113 |
atatgaggacacaaggtaataggttagttagttgattcatgaaagagtatgccaaaaattgatctagaacttggtttgccactgagtcatctgaacatca |
212 |
Q |
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| T |
16757996 |
atatgaggacacaaggtaataggttagttagttgattcatgcaagagtatgccaaaaattgatctagaacttggtttgccaccgagtcatctgaacatca |
16758095 |
T |
|
| Q |
213 |
atgcatcaaaggagaactcatacgagtattattgggttcccaagtcccacatggagtagtataagttgttcggttgagcgtgaacatgttaaatgtgcca |
312 |
Q |
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| T |
16758096 |
atgcatcaaaggagaactcatacgagtattatggggttcccaagtcccacatggagtagtataagttgtttggttgagcattaacatgttaaatgtgcca |
16758195 |
T |
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| Q |
313 |
ataacaatgctatgatttggatgaaatggcattgtgttcacttatctattgaaggttttattctttatactttgtctcttattaagtttgcaatttacgg |
412 |
Q |
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| T |
16758196 |
ataacaatgctatgatttggatgaaatggcactgtgttcacttgtctattgaaggttttattctttatactttgtctcttattaagtttgcaatttacgg |
16758295 |
T |
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| Q |
413 |
tgctaaatctgctgtctcacacgtagtcctcagggagtttaagacatgcatccttcttctaggaaactattatctctttggatccaatctcagtacaacc |
512 |
Q |
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| T |
16758296 |
tgctaaatctgctgtctcacacgtagtcctcagggagtttaagacatgcatccttcatctaggaaactattatctctttggatcgaatctcagtacaacc |
16758395 |
T |
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| Q |
513 |
agtatatgtggcgcacccgtatctgcctcgcattcacagctagcggtggcacat |
566 |
Q |
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| T |
16758396 |
agtatatgtggcacacccgtatctgcctcgcattcacagctagcggtggcacat |
16758449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 360 - 554
Target Start/End: Original strand, 16753409 - 16753603
Alignment:
| Q |
360 |
attgaaggttttattctttatactttgtctcttattaagtttgcaatttacggtgctaaatctgctgtctcacacgtagtcctcagggagtttaagacat |
459 |
Q |
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| T |
16753409 |
attgaacgttttattctttatactctgtctctcattgactttgcaatttagagcgctaaatctgctgtcttgcatgtagtcctcagggagtttaagacat |
16753508 |
T |
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| Q |
460 |
gcatccttcttctaggaaactattatctctttggatccaatctcagtacaaccagtatatgtggcgcacccgtatctgcctcgcattcacagcta |
554 |
Q |
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| T |
16753509 |
gcgttctgctttgaggaaactattatctctttggatccaatctcagtataaccaatatctgcagcgcacccgtgtctgcaacgcattcacagcta |
16753603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 401 - 527
Target Start/End: Original strand, 16745350 - 16745476
Alignment:
| Q |
401 |
tgcaatttacggtgctaaatctgctgtctcacacgtagtcctcagggagtttaagacatgcatccttcttctaggaaactattatctctttggatccaat |
500 |
Q |
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|||||||||| |||||| ||||||||| || ||||| ||||| || ||||||||||||||||||| |||||||||||||||| |||||||||||| ||| |
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| T |
16745350 |
tgcaatttacagtgctacatctgctgtttcgcacgttgtccttgggcagtttaagacatgcatcctgcttctaggaaactattttctctttggatctaat |
16745449 |
T |
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| Q |
501 |
ctcagtacaaccagtatatgtggcgca |
527 |
Q |
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| T |
16745450 |
cctggtacaatcagtatctgcggcgca |
16745476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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