View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2005_low_10 (Length: 237)
Name: NF2005_low_10
Description: NF2005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2005_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 36288714 - 36288495
Alignment:
| Q |
1 |
atcactatctgcggcgatgcttcagaatcaacactcattgtatagtttcctaatgaaggatcattctccgatttccatgaacaaaaagttgcatccttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36288714 |
atcactatctgcggcgatgcttcagaatcaacactcattgtatagtttcctaatgaaggatcattctctgatttccatgaacaaaaagttgcatccttcc |
36288615 |
T |
|
| Q |
101 |
caattccacttccaccgctcgccggagctttcatacctggaagatatgtatcagttggatcttcaaaactttgccaaatctctttgttattttctctatc |
200 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36288614 |
caattccatttccaccgctcaccggagctttcatacctggaagatatgtatcagttggatcttcaaaactttgccaaatctctttgttattttctctatc |
36288515 |
T |
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| Q |
201 |
tgaaagaataaggtttccat |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
36288514 |
tgaaagaataaggtttccat |
36288495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 12096860 - 12097080
Alignment:
| Q |
1 |
atcactatctgcggcgatgcttcagaatcaacactcattgtatagtttcctaatgaaggatcattctccgatttccatgaacaaaaagttgcatccttcc |
100 |
Q |
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|||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||| | ||| |||||||||||||||||||| |||||||||| |
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| T |
12096860 |
atcactatatgtggtgatgcttcagaatcaacactcattgtatagtttccaaatgaaggatcttcctctgatttccatgaacaaaaagtagcatccttcc |
12096959 |
T |
|
| Q |
101 |
caattccacttccaccgctcgccggagctttcatacctggaagatatgtatcagttggatcttcaaaactttgccaaatctctttgttattttctctatc |
200 |
Q |
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|||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12096960 |
caattccacttccaccactcgccgaaactttcatacctggaagatatgtatcagttggatcttcaaagctttgccaaatctctttgttattttctctatc |
12097059 |
T |
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| Q |
201 |
tgaaagaataaggtttccatc |
221 |
Q |
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|||||||||||||| ||||| |
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| T |
12097060 |
agaaagaataaggttcccatc |
12097080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 21933250 - 21933201
Alignment:
| Q |
129 |
tttcatacctggaagatatgtatcagttggatcttcaaaactttgccaaa |
178 |
Q |
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|||||||||||||||| ||||||| ||||||| | ||||||||||||||| |
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| T |
21933250 |
tttcatacctggaagaaatgtatctgttggatttgcaaaactttgccaaa |
21933201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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