View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2005_low_3 (Length: 335)
Name: NF2005_low_3
Description: NF2005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2005_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 316
Target Start/End: Original strand, 31651701 - 31652007
Alignment:
| Q |
10 |
aagcaaaggggcatcccggataatcaaattcatctgaatcagctttcctcatacgctcgggatgaaactgcaatcccataataaacttaccctcttctgg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31651701 |
aagcaaaggggcatcccggataatcaaattcatctgaatcagctttcctcatccgctcgggatgaaactgcaatcccataataaacttaccctcttctgg |
31651800 |
T |
|
| Q |
110 |
attataagcatcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgttgtgcaagtctcttaacaccttgatgatga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31651801 |
attataagcatcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgctgtgcaagtctcttaacaccttgatgatga |
31651900 |
T |
|
| Q |
210 |
tagctattaaccaaaatgtccattttatcatcttccaaagaatccttaaaccaatgatgcaaaggtgtattttcaacaacttttacctcatgtctatgac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31651901 |
tagctattaaccaaaatgtccattttatcatcttccaaagaatccttaaaccaatgatgcaaaggtgtattttcaacaacttttacctcatgtctatgac |
31652000 |
T |
|
| Q |
310 |
catcata |
316 |
Q |
| |
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||||||| |
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| T |
31652001 |
catcata |
31652007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 219497 - 219196
Alignment:
| Q |
18 |
gggcatcccggataatcaaattcatctgaatcagctttcctcatacgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataag |
117 |
Q |
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|||||||| || |||||||| |||||||||| || ||| ||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
219497 |
gggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataag |
219398 |
T |
|
| Q |
118 |
catcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgttgtgcaagtctcttaacaccttgatgatgatagctatt |
217 |
Q |
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||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |
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| T |
219397 |
cataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatgatagctatt |
219298 |
T |
|
| Q |
218 |
aaccaaaat---gtccattttatcatcttccaaagaatccttaaaccaatgatgcaaaggtgtattttcaacaacttttacctcatgtctatgaccatca |
314 |
Q |
| |
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||||||||| |||||| |||| || |||||||||||||||||||| | ||||||||| |||| |||||| || | ||||||||||||||||| |
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| T |
219297 |
aaccaaaatctcatccattccttcatttttcaaagaatccttaaaccaatcaaacaaaggtgtgtttttaacaaccttaataacatgtctatgaccatca |
219198 |
T |
|
| Q |
315 |
ta |
316 |
Q |
| |
|
|| |
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|
| T |
219197 |
ta |
219196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 54 - 274
Target Start/End: Complemental strand, 49630739 - 49630519
Alignment:
| Q |
54 |
ttcctcatacgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataagcatcagggtcataaaacccttcaatcaaaccatcag |
153 |
Q |
| |
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|||||||| | ||| |||||||| || | |||||||||||||| |||||||| ||||| ||| || || | ||||| ||||||| ||||||||| | |
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| T |
49630739 |
ttcctcattctctctggatgaaattgaaggcccataataaactttccctcttcaggattgtaattatttggattgtaaaatccttcaaccaaaccatctg |
49630640 |
T |
|
| Q |
154 |
gagcaaaagccattggaacaaaacgttgtgcaagtctcttaacaccttgatgatgatagctattaaccaaaatgtccattttatcatcttccaaagaatc |
253 |
Q |
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||||||| |||||||||||||| | | |||||||||||||||||| ||||| || || ||||| |||| || | |||||| |||||| | ||||| || |
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| T |
49630639 |
gagcaaatgccattggaacaaatctctctgcaagtctcttaacaccctgatggtggtaactattcaccatgatctgcattttgtcatctacaaaagagtc |
49630540 |
T |
|
| Q |
254 |
cttaaaccaatgatgcaaagg |
274 |
Q |
| |
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||||||||||| ||||||||| |
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| T |
49630539 |
cttaaaccaatcatgcaaagg |
49630519 |
T |
|
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