View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2005_low_5 (Length: 312)
Name: NF2005_low_5
Description: NF2005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2005_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 21 - 304
Target Start/End: Original strand, 34976836 - 34977119
Alignment:
| Q |
21 |
tgtatgcttcaattgaaggatgttttaggatgcatggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagt |
120 |
Q |
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| T |
34976836 |
tgtatgcttcaattgaaggatgtgttaggatgcatggaatctttacaaacattgaccggagtgaaaattggtaaggatggaatagagttaattaaagagt |
34976935 |
T |
|
| Q |
121 |
tgggaaagttcagacagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttgga |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
34976936 |
tgggaaagttcagacagttaaggaagttgagcttgttttatgtaagggcagaacattcaagcgctctatattcctcactgaatgagatgaaacacttgga |
34977035 |
T |
|
| Q |
221 |
gaatttatacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
304 |
Q |
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| T |
34977036 |
gaatttatacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
34977119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 28 - 304
Target Start/End: Original strand, 34983890 - 34984166
Alignment:
| Q |
28 |
ttcaattgaaggatgttttaggatgcatggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaa |
127 |
Q |
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| T |
34983890 |
ttcaattgaaggatgttataggaggcatggaatctctacaaacattgagtggagtgaaaattggtaagggtggaatagagttaattaaagagttgggaaa |
34983989 |
T |
|
| Q |
128 |
gttcagacagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaattta |
227 |
Q |
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| T |
34983990 |
gctaagacagttaaggaagttgaccttgttttatgcgagggcagaacattttagcgctttatcttcctcattgaatgagatgcgacacttagaaaaatta |
34984089 |
T |
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| Q |
228 |
tacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
304 |
Q |
| |
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| ||||||||||||| || ||| | ||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34984090 |
tgcattgtgtcaggatgggaagatggttcttattatgatgtcattgatttacatttggtttcgcctccacctatgct |
34984166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 28 - 304
Target Start/End: Complemental strand, 2304482 - 2304206
Alignment:
| Q |
28 |
ttcaattgaaggatgttttaggatgcatggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaa |
127 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2304482 |
ttcaattgaaggatgttataggaggcatggaatctctacaaacattgactggaatgaaaattggtaagggtggaatagagttaattaaagagttgggaaa |
2304383 |
T |
|
| Q |
128 |
gttcagacagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaattta |
227 |
Q |
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| | || |||||||||||||| ||||||||| ||||| | ||||||||||| |||| |||||||||| |||||||||||||||||| |||||| ||| |
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| T |
2304382 |
gctaaggcagttaaggaagtttagcttgtttgatgtgaggctagaacattcaatcgctttatcttcctcgttgaatgagatgcgacactcggagaaatta |
2304283 |
T |
|
| Q |
228 |
tacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
304 |
Q |
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| |||| ||||| ||| ||||| || | ||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
2304282 |
tgcattatgtcaagaagcggagatgatggggtttttgatgtcattgatttacatttggtttcgcttccacctatgct |
2304206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 239
Target Start/End: Original strand, 34990719 - 34990930
Alignment:
| Q |
28 |
ttcaattgaaggatgttttaggatgcatggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaa |
127 |
Q |
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|||| |||||||||||| | ||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| ||||| ||||||||||| |
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| T |
34990719 |
ttcatttgaaggatgttattggatgcatggaatctctacaaacgttgagtggagtgaaaattggtaagggtggaatagagttgattaaggagttgggaaa |
34990818 |
T |
|
| Q |
128 |
gttcagacagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaattta |
227 |
Q |
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| | || | ||||||||||||||||||| | ||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34990819 |
gctaaggcggttaaggaagttgagcttgaatgatgtgagggcaagacattcaagcgctttatcttcctcactgaatgagatgcgacacttggagaaatta |
34990918 |
T |
|
| Q |
228 |
tacattgtgtca |
239 |
Q |
| |
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|||||||||| |
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| T |
34990919 |
cgcattgtgtca |
34990930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 35 - 304
Target Start/End: Original strand, 40581407 - 40581676
Alignment:
| Q |
35 |
gaaggatgttttaggatgcatggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaagttcaga |
134 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| ||||| | || |
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| T |
40581407 |
gaaggatgttataggatgcatggaatctctacaaacattgagtgcagtgaaaattggtaagggtggaatagagttaattaaagagttgagaaagctaagg |
40581506 |
T |
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| Q |
135 |
cagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaatttatacattg |
234 |
Q |
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|||||||||||||||| ||||||||||| | ||||||||||| |||||| ||||||||||| |||||||||||||||||||| | || ||| ||||| |
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| T |
40581507 |
cagttaaggaagttgaacttgttttatgcgagggcagaacattttagcgctttatcttcctcattgaatgagatgcgacacttgaaaaaattaagcattg |
40581606 |
T |
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| Q |
235 |
tgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
304 |
Q |
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| |||||| |||| | || | | || |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40581607 |
tatcaggatggggacaagattttgtttatgatgtcattgatttacatttggtttcgcctccacctatgct |
40581676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 223
Target Start/End: Complemental strand, 22619818 - 22619689
Alignment:
| Q |
94 |
aggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttc |
193 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| || ||||||||||| ||| | ||| || ||| ||||||| ||||||| ||||||| |
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| T |
22619818 |
aggatggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttc |
22619719 |
T |
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| Q |
194 |
ctcactgaatgagatgcgacacttggagaa |
223 |
Q |
| |
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| | |||||||| |||||||||||||||| |
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| T |
22619718 |
cgtattgaatgagctgcgacacttggagaa |
22619689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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