View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2005_low_7 (Length: 285)
Name: NF2005_low_7
Description: NF2005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2005_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 30498620 - 30498367
Alignment:
| Q |
1 |
taaagttttcttatttaaagattttaggaaaatttgggnnnnnnnttatcctcacatatttttgttgcaaggccctaaatatcagtcatgttagttttaa |
100 |
Q |
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| T |
30498620 |
taaagttttcttatttaaagattttaggaaaatttggggaaaaaattatcctcacatatttttgttgcaag-ccctaaataagagttatgttagttttaa |
30498522 |
T |
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| Q |
101 |
atacacatgacaaatggattaccacattagctatattgcaattcagcaacactnnnnnnnnttgattgtatgaaaatacatgacaagtggattaccacat |
200 |
Q |
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| T |
30498521 |
atacacatgacaaatggattagcacattagctatattgcagttcagcaacactaaagaaaattgattgtatgaaaatacatgacaagtggattaccacat |
30498422 |
T |
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| Q |
201 |
cagttatggacctacgtattggttatgttagttttaaatatgttgaaacaaaatg |
255 |
Q |
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| T |
30498421 |
cagttatggacctacgtattggttatgttagttataaatatgatgaaacaaaatg |
30498367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 30497321 - 30497275
Alignment:
| Q |
99 |
aaatacacatgacaaatggattaccacattagctatattgcaattca |
145 |
Q |
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||||||||||||||| | |||||||||||||||||| ||||| |||| |
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| T |
30497321 |
aaatacacatgacaagtagattaccacattagctatgttgcagttca |
30497275 |
T |
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