View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20060_high_11 (Length: 343)
Name: NF20060_high_11
Description: NF20060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20060_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 183 - 326
Target Start/End: Original strand, 18161265 - 18161408
Alignment:
| Q |
183 |
ccttagggtgctttcttgataaagaataagaagagaaataatctatgagggagaccacatggtagaatgacaccgttccaatccatttaaagatcaaata |
282 |
Q |
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| T |
18161265 |
ccttagggtgcttttttgataaagaataagaagagaaataatctaggagagagaccacatggtagaatgacaccattccaatccatttaaagatcaaata |
18161364 |
T |
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| Q |
283 |
ccaaatttccgcaaccaagttacatctacaaaacaagtgatcct |
326 |
Q |
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| T |
18161365 |
ccaaatttccgctaccaagttacatcgacaaaacaagtgatcct |
18161408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 165
Target Start/End: Original strand, 18160939 - 18161104
Alignment:
| Q |
3 |
attgcatacaactgttatttgctaggaagctgtcttattattctctaccttatgtactgaatgaaag--gaaagaatgaattaagcagaatataatgtag |
100 |
Q |
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| T |
18160939 |
attgtatacaactgttattttcaaggaagctgtcttattattttctaccttatgtacagaatgaaaggagaaataatgaattaagcagaatataatgaat |
18161038 |
T |
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| Q |
101 |
ctag-aagagttgactccactgacagtgtattttattgtgtttctgattcttaaattcctgcatta |
165 |
Q |
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| T |
18161039 |
gtagccagggttgactccactgacagtgtattttattgcatttctgattcttaaattcctgcatta |
18161104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 19407206 - 19407263
Alignment:
| Q |
70 |
gaaagaatgaattaagcagaatataatgtagctagaagagttgactccactgacagtgtat |
130 |
Q |
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| T |
19407206 |
gaaataatgaattaagcagaatataatgttgc---cagagttgactccacggacagtgtat |
19407263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 210 - 324
Target Start/End: Original strand, 33899020 - 33899139
Alignment:
| Q |
210 |
aagaagagaaataatctatgagggagaccacat-----ggtagaatgacaccgttccaatccatttaaagatcaaataccaaatttccgcaaccaagtta |
304 |
Q |
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| T |
33899020 |
aagaagataaatgatctaggagggaaaccacattttagggtagaatgaccccgttacaatccatttaaaaatcgaatatcatatttccgcaacaaagtta |
33899119 |
T |
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| Q |
305 |
catctacaaaacaagtgatc |
324 |
Q |
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| T |
33899120 |
catctgcaaaacaagtgatc |
33899139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 279 - 326
Target Start/End: Original strand, 6796471 - 6796518
Alignment:
| Q |
279 |
aataccaaatttccgcaaccaagttacatctacaaaacaagtgatcct |
326 |
Q |
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| T |
6796471 |
aataccaaatttccgcaacaaagttacatctacaaaacaagtgatcct |
6796518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 326
Target Start/End: Complemental strand, 19403373 - 19403304
Alignment:
| Q |
256 |
cgttccaatccatttaaagatcaaataccaaatttccgcaaccaagttacatctacaaaacaagtgatcct |
326 |
Q |
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| T |
19403373 |
cgttccgatccatttaaaaatcgaataccaaatgtctgcaatgaagtta-atctacaaaacaagtgatcct |
19403304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 326
Target Start/End: Original strand, 5831587 - 5831638
Alignment:
| Q |
275 |
atcaaataccaaatttccgcaaccaagttacatctacaaaacaagtgatcct |
326 |
Q |
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| T |
5831587 |
atcaaatactaaatttccacaacaaaattagatctacaaaacaagtgatcct |
5831638 |
T |
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