View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20060_high_12 (Length: 330)
Name: NF20060_high_12
Description: NF20060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20060_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 7 - 316
Target Start/End: Original strand, 24230015 - 24230317
Alignment:
| Q |
7 |
atagtacagaattagcattataaaaatctaaaaccaacatcnnnnnnnnntacaagaattgtaaaatcatcataaatttatttatttttataaccaatta |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24230015 |
atagtacagaattagcattataaaaatctaaaaccaaaa----------atacaagaattgtaaaatcatcataaatttatttatttttataaccaatta |
24230104 |
T |
|
| Q |
107 |
tgtcatacnnnnnnnnnnnnnngtataatatacaaaaagag--tcaaagataaataaaagcatggataattatcattttccgacaatg-gtgtatatata |
203 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24230105 |
tgtcatacttttttttttttttgtataatatacaaaaagagagtcaaagataaataaaagcatggataattatcattttccgacaatgtgtgtatatata |
24230204 |
T |
|
| Q |
204 |
aaccaaaccaaaacaaaggggtctacacacatgaggtgtttcatcatttaatgttttgttgacatatgaactactacaaagtcatcatctttgattgaaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24230205 |
aaccaaaccaaaacaaaggggtctacacacatgaggtgtttcatcattgaatgttttgttgacatatgaactactacaaagtcatcatctttgattgaaa |
24230304 |
T |
|
| Q |
304 |
attctcaccttct |
316 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24230305 |
attctcaccttct |
24230317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University