View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20060_high_13 (Length: 319)
Name: NF20060_high_13
Description: NF20060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20060_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 307
Target Start/End: Original strand, 48245606 - 48245907
Alignment:
| Q |
8 |
ccaagaaaataccgtatgacaaacggactaagaaacgaaaattctgattggcacaaccacgtcgatacatatccatccacacctgtcattattcctctaa |
107 |
Q |
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| T |
48245606 |
ccaaaaaaataccgtatgacaaacggactaagaaacgaaaattctgattggcacaaccacgtcgatacatatccatccacacctgtcattattcctttaa |
48245705 |
T |
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| Q |
108 |
tttttatcggttgataacaaaaacaaaaatgttttattgacaaccaa-nnnnnnnngtttcgcttagtagttattagaaattaaagtgaataagttgagg |
206 |
Q |
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| T |
48245706 |
tttttatcggttgataacaaaaacaaaaatgttttatcgacaaccaatttttttttgtttagcttagtagttattagaaattaaagtgaataagttgagg |
48245805 |
T |
|
| Q |
207 |
tatctttgaattataa-cctaacaattaagtgtgtgtttggttttgagatgtttttatatttggatacctttattataaaagggatttgtatgaaattat |
305 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48245806 |
tatctttgaattataaccctaacaattaagtgtgtgtttggtttggcgatgtttttatatttggatacctttattataaaagggatttgtatgaaattat |
48245905 |
T |
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| Q |
306 |
tg |
307 |
Q |
| |
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|| |
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| T |
48245906 |
tg |
48245907 |
T |
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