View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20060_high_14 (Length: 296)
Name: NF20060_high_14
Description: NF20060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20060_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 280
Target Start/End: Complemental strand, 18940644 - 18940385
Alignment:
| Q |
21 |
ctgaattgaaaactgaaacgtgtttattgttgtgctttttctttgatgattattttctctcatgattgnnnnnnnngattccaataatatagttttaatc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18940644 |
ctgaattgaaaactgaaacgtgtttattgttgtgctttttctttgatgattattttctctcatgattgtttcttttgattccaataatatagttttaatc |
18940545 |
T |
|
| Q |
121 |
tcatgannnnnnnctcaagaatgtaatataagtcatgaagctagataactcagttgaaaaagaaccgaaggatgaagttctttcgccgagattcgtgccg |
220 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18940544 |
tcatgatttttttctcaagaatgtaatataagtcatgaagctagataactcagttgaaaaagaaccgaaggatgaagttctttcgccgagattcgtgcta |
18940445 |
T |
|
| Q |
221 |
aaagtctcgaaggttcttcgatcctaaaatgttcccatgatgagtgttattggtctcctt |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18940444 |
aaagtctcgaaggttcttcgatcctaaaatgttcccatgatgagtgttattggtctcctt |
18940385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 19897651 - 19897753
Alignment:
| Q |
136 |
caagaatgtaatataagtcatgaagctagataactcagttgaaaaagaaccgaaggatgaagttctttcgccgagattcgtgccgaaagtctcgaaggtt |
235 |
Q |
| |
|
|||||||||||| ||||| |||||||| || ||| || ||||||||||| | |||||| ||||| | |||||| ||| |||| ||||||||| |||||| |
|
|
| T |
19897651 |
caagaatgtaatgtaagttatgaagctcgagaacccaattgaaaaagaatcaaaggataaagttttaccgccgaaatttgtgctgaaagtctcaaaggtt |
19897750 |
T |
|
| Q |
236 |
ctt |
238 |
Q |
| |
|
||| |
|
|
| T |
19897751 |
ctt |
19897753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University