View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20060_high_18 (Length: 209)

Name: NF20060_high_18
Description: NF20060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20060_high_18
NF20060_high_18
[»] chr5 (9 HSPs)
chr5 (15-193)||(37429085-37429263)
chr5 (15-94)||(37640225-37640304)
chr5 (49-94)||(37400540-37400585)
chr5 (49-94)||(37533487-37533532)
chr5 (49-94)||(37594711-37594756)
chr5 (49-94)||(37697174-37697219)
chr5 (49-94)||(37703055-37703100)
chr5 (49-94)||(37824282-37824327)
chr5 (49-94)||(37712011-37712056)
[»] chr4 (2 HSPs)
chr4 (12-94)||(24217468-24217550)
chr4 (49-94)||(16842604-16842649)
[»] chr3 (1 HSPs)
chr3 (49-94)||(14553497-14553542)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 37429085 - 37429263
Alignment:
Q  15 cctgtgagttagttatcactgagatacaaccatgacaacgaaggcaaggaataacaccagtgtggaattgttccgtttaagttgttagattgtaaaagaa 114  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429085 cctgtgagttggttatcattgagatacaaccatgacaacgaaggcaaggaataacaccagtgtggaattgttccgtttaagttgttagattgtaaaagaa 37429184  T
Q  115 caaaatgtaacttggaaaatttggtgatttgaatcggaattgggccatctaatttattaaacgataaatctaacataga 193  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429185 caaaatttaacttggaaaatttggtgatttgaatcggaattgggccatctaatttattaaacgataaatctaacataga 37429263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 37640225 - 37640304
Alignment:
Q  15 cctgtgagttagttatcactgagatacaaccatgacaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 94  Q
    |||||||| | ||| |||||||| ||||||  | ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37640225 cctgtgagattgttgtcactgaggtacaactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37640304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 37400585 - 37400540
Alignment:
Q  49 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 94  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37400585 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37400540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 37533487 - 37533532
Alignment:
Q  49 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 94  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37533487 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37533532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 37594711 - 37594756
Alignment:
Q  49 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 94  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37594711 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37594756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 37697174 - 37697219
Alignment:
Q  49 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 94  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37697174 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37697219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 37703055 - 37703100
Alignment:
Q  49 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 94  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37703055 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37703100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 37824282 - 37824327
Alignment:
Q  49 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 94  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37824282 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37824327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 37712011 - 37712056
Alignment:
Q  49 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 94  Q
    |||| |||||||| ||||||||||| |||||||||||||| |||||    
T  37712011 acaatgaaggcaaagaataacaccactgtggaattgttccatttaa 37712056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 24217550 - 24217468
Alignment:
Q  12 gaacctgtgagttagttatcactgagatacaaccatgacaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 94  Q
    |||||||| | || ||| ||||| |||| ||||  | ||||||||||||||||||||||||| || ||||||||||| |||||    
T  24217550 gaacctgttatttggttgtcactaagatccaactctaacaacgaaggcaaggaataacaccattgcggaattgttccatttaa 24217468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 16842649 - 16842604
Alignment:
Q  49 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 94  Q
    ||||||||||||| ||||||||||| | |||||||||||| |||||    
T  16842649 acaacgaaggcaaagaataacaccaatttggaattgttccatttaa 16842604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 14553497 - 14553542
Alignment:
Q  49 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 94  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  14553497 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 14553542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University