View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20060_high_3 (Length: 494)
Name: NF20060_high_3
Description: NF20060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20060_high_3 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 13 - 494
Target Start/End: Original strand, 11902628 - 11903109
Alignment:
| Q |
13 |
ggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccagagttgaattaatctctctgcatcaatca |
112 |
Q |
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| T |
11902628 |
ggaacaaagtcattgaaacaaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatca |
11902727 |
T |
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| Q |
113 |
aataatcttctggaaacaatgaacaatatgcaaaacataacttgtgaagcattggaagatccttgtaatacataaacttgagctcttgtagaaacttcct |
212 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902728 |
aataatctcttggaaacaatgaacaatatgcaaaacataacttgtgaagcattggaagatccttgtaatacataaacttgagctcttgtagaaacttcct |
11902827 |
T |
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| Q |
213 |
ctccacttctgctatttggtctgctgccaaaattgaaacaccaccagcactttggttcttcatcaacattgctacggtcacaatcgcaagagggactcca |
312 |
Q |
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| T |
11902828 |
ctccacttctgctatttggtctgctgccaaaattgaaacaccaccagcactttggttcttcatcaacattgctacggtcacaatcgcaagagggactcca |
11902927 |
T |
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| Q |
313 |
ccacaatccttcacgagttcccattcgatgttgtcttgtttgttgttggttgaagttgaagttggcccacgaatttgttggaataacaattgagattcat |
412 |
Q |
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| T |
11902928 |
ccacaatccttcacgagttcccattcgatgttgtcttgtttgttgttggttgaggttgaagtttgcccacgaatttgttggaataacaattgagattcat |
11903027 |
T |
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| Q |
413 |
gtctgttaagccctttcaaaacatacctggcaacagaaatattatcggcgacatagttgctacgtgtagtgatgagtattgc |
494 |
Q |
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| T |
11903028 |
gtctgttaagccctttcaaaacatacctggcaacagaaatattatcggcgacatagttgctacgtgtagtgatgagtattgc |
11903109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 11827762 - 11827622
Alignment:
| Q |
12 |
aggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccagagttgaattaatctctctgcatcaatc |
111 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
11827762 |
aggaacaaagtcttcgaaacaagcatgaccaaattgttgttctggattgataagaaacccttcaccagtccagagttgaatcaatctctctgcatcaatc |
11827663 |
T |
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| Q |
112 |
aaataatcttctggaaacaatgaacaatatgcaaaacataa |
152 |
Q |
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| T |
11827662 |
aaataatcttctggaaacaatgaacaatatgcaaagcataa |
11827622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 11859897 - 11859754
Alignment:
| Q |
12 |
aggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccagagttgaattaatctctctgcatcaatc |
111 |
Q |
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| T |
11859897 |
aggaacaaagtctttgaaacaagcttgaccaaattgttgttctggattgataagaaacccttcagccgtccagagttgaatcaatctctctgcatcaatc |
11859798 |
T |
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| Q |
112 |
aaataatcttctggaaacaatgaacaatatgcaaaacataactt |
155 |
Q |
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| T |
11859797 |
aaataatcttctggaaacaatgaacaatatgcgaagcataactt |
11859754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 12038604 - 12038513
Alignment:
| Q |
64 |
agaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaaacataactt |
155 |
Q |
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| T |
12038604 |
agaaatccttcagccgtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaactt |
12038513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 70 - 230
Target Start/End: Complemental strand, 11731508 - 11731348
Alignment:
| Q |
70 |
ccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaaacataacttgtgaagcattggaa |
169 |
Q |
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||||||||| ||| ||||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||| || || || | | | |||| |
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| T |
11731508 |
ccttcagcaaaccaaagttgaattaatctctcggcatcaatcaaatgatgttctggaaacaatgaacaaaatgcaaagcacaatttataacatgtgggaa |
11731409 |
T |
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| Q |
170 |
gatccttgtaatacataaacttgagctcttgtagaaacttcctctccacttctgctatttg |
230 |
Q |
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| T |
11731408 |
gatcctcgtaatatctaaacttgagctcgtttagaaactccctctccacgtcttctatttg |
11731348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 11974974 - 11975064
Alignment:
| Q |
65 |
gaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaaacataactt |
155 |
Q |
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| T |
11974974 |
gaaatccttctgctgtcaagagatgaattaatctctcgacatcaatcaaatgatcttgaggaaacaatgaacaaaattcaaaacaaaactt |
11975064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 373
Target Start/End: Complemental strand, 11731301 - 11731226
Alignment:
| Q |
295 |
atcgcaagagggactccaccacaatccttcacgagttcccattcgatgttgtcttgtttgttgttggttgaagttgaag |
373 |
Q |
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| T |
11731301 |
atcgcaagaggcactcccccacaatccttcacaatctccaatccg---ttgtcttgtttgttgttggttgaagttgaag |
11731226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 12038671 - 12038627
Alignment:
| Q |
12 |
aggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgg |
56 |
Q |
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| T |
12038671 |
aggaacaaagtcgttgaaacaagctcgaccaaattgttgttctgg |
12038627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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