View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20060_high_6 (Length: 423)
Name: NF20060_high_6
Description: NF20060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20060_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 22383010 - 22382634
Alignment:
| Q |
19 |
aaaatggtatcatcagcatcaaaaagcttcaattttcgaaacccgttgtccttaagcatcttcacaactttcttaggtggaagttggtgggttgtcattg |
118 |
Q |
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| T |
22383010 |
aaaatggtatcatcagcatcaaaaagtttcaattttcgaaacccgttgtccttaagcatcttcacaactttcttaggtggaagttggtgggttgtcattg |
22382911 |
T |
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| Q |
119 |
ttccccagtttacaccaacccaagcagaggaagatgagattatggttaggaagatgatgaggaatgttgctaggtatatgcaatatgatgcattttcttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22382910 |
ttccccagtttacaccaacccaagcagaggaagatgagattatggttaggaagatgatgaggaatgttgctaggtatatgcaatttgatgcattttcttg |
22382811 |
T |
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| Q |
219 |
cgccatttttgttgcaaagagtgtttgtgggttttaggaagattctagaatgttgaaatataacaagaatgatttgaaaatgagaaaatgtatgtagctg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
22382810 |
cgccatttttgttgcaaagagtgtttgtgggttttaggaagattctagaatgttgaaatataac-agaatgatttgaaaatgacaaaatgtatgtagctg |
22382712 |
T |
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| Q |
319 |
catttatatccgtgggtgtatgtagattagtttgttagtgcgtgtatttcgtgccttaacattgaaggtttaaaaaaa |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22382711 |
catttatatccgtgggtgtatgtagattagtttgttagtgcgtgtatttcgtgccttaacattgaaggtaaaaaaaaa |
22382634 |
T |
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