View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20060_high_8 (Length: 380)
Name: NF20060_high_8
Description: NF20060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20060_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 72 - 366
Target Start/End: Complemental strand, 22382548 - 22382252
Alignment:
| Q |
72 |
gtagtagaaaatggaattaagattattttgggttacatgatatgaaattaagattcgttccttaattcggtgtatgatgcaagccggatattcttaaaat |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22382548 |
gtagtagaaaatggaattaagattattttgggttacataatatgaaattaagattcgttccttaattcggtgtatgatgcaagccggatattcttaaaat |
22382449 |
T |
|
| Q |
172 |
gaaattattgnnnnnnnn--aataaactattaattgactatctctcattttgcactccatattgattcgagatcatttatgtcatgggaacagaactttg |
269 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22382448 |
gaaattattgttttttttttaataaactattaattgactatctctcattttgcactccatattgattcgagatcatttatgtcatgggaacagaactttg |
22382349 |
T |
|
| Q |
270 |
gagctcaaaagatcccgaggtcatagagaacgaaaagtgatcctgttagacttaattaggactattgtttgctagatcgagatccactatgtagaat |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22382348 |
gagctcaaaagatcccgaggtcatagagaatgaaaactgatcctattagacttaattaggactattgtttgctagatcgagatccactgtgtagaat |
22382252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University