View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20060_low_1 (Length: 517)
Name: NF20060_low_1
Description: NF20060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20060_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 129 - 502
Target Start/End: Original strand, 9562100 - 9562476
Alignment:
| Q |
129 |
gcgggtggctttcaccatccatcacatcaccacaagtctaatgtctacatgatgaagaaacacgaatttggatagcaaggggtaaggatttgagaaaggc |
228 |
Q |
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| T |
9562100 |
gcgggtggctatcaccgaccatcgcatcaccacaagtctgatgtctacatgatgaaaaaacacgaatttggatagaaaggggaaaggatttgagaaaggc |
9562199 |
T |
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| Q |
229 |
agtggatatgttttcttagagagaaggtaagataatttagagagagaatgactcgttaattatttaatgcttttgaacataacgatcgagtgtggcaacg |
328 |
Q |
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| T |
9562200 |
ggtggatatgttttcttagagagaaggtaggatagtttagagagagaaggactcattaattatttaatgcttttgaacataacgatcgagtgtggcaacg |
9562299 |
T |
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| Q |
329 |
actaatgatttcctatagactaatttaatctaatggttaaaacgagtggtataccagtgatgaattta----aaccctcaccctagaatctatctcaatt |
424 |
Q |
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| T |
9562300 |
actaatgatttcctatagactaatttaatctaatggttaaaacgagtggtataccggtgatgaatttaattgaaccatcactatagaatccacctcaatt |
9562399 |
T |
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| Q |
425 |
ataatgattaaaaatgttttgacttttatagtaaaaaatcacacataacattcatgattgtgatgtatgtaagttttt |
502 |
Q |
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| T |
9562400 |
ataatgattaaaaatg-tttcacttttatcgtaaaaaatcacacataacattgatgattgtgatgtatgtaagttttt |
9562476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 9562017 - 9562102
Alignment:
| Q |
11 |
agaaaatcgaaacggagagatgaaatagcgccagccaacaccatgacagcaaaccgcaaacaacaacatccaccaaaaccaccggcg |
97 |
Q |
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| T |
9562017 |
agaaaatcgaatatgagagatgaaatagcgccaaccaacaccatgacagc-aaccgcaaacaacaacaaccaccaaaaccaccggcg |
9562102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 442 - 502
Target Start/End: Original strand, 9570515 - 9570575
Alignment:
| Q |
442 |
tttgacttttatagtaaaaaatcacacataacattcatgattgtgatgtatgtaagttttt |
502 |
Q |
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| T |
9570515 |
tttgacttttatcgtaaaaagtcacacacaacattgatgattgtgatgtatgtaagttttt |
9570575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 36539973 - 36540036
Alignment:
| Q |
316 |
gagtgtggcaacgactaatgatttcctatagactaatttaatctaatggttaaaacgagtggta |
379 |
Q |
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| T |
36539973 |
gagtgtggcaatgtctaatgatatgctatagaccaatttaatctaatggtaaaaaagagtggta |
36540036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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