View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20060_low_10 (Length: 376)
Name: NF20060_low_10
Description: NF20060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20060_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 188 - 373
Target Start/End: Original strand, 9561864 - 9562049
Alignment:
| Q |
188 |
tggtgttaatagacaaccaccgaccccggaacagctacaaacctccggcgcaaaccaatagcagccaccaaccaaaaccagatcgaagtgaagaaacgaa |
287 |
Q |
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| T |
9561864 |
tggtgttaacagactgccaccgaccccggaatagctacaaacctccggtgcaaaccaatagcagacaccaaccaaaaccagatcgaagtgaagaaacgaa |
9561963 |
T |
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| Q |
288 |
ttcataaacgatcctatatccaaggtgggtctcaaactgaaagaaaaccgtcgagaaaatcgaaccggagagatgaaatagcgcca |
373 |
Q |
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| T |
9561964 |
ttcataaacgttcctatatccaagctgggtctgaaactgaaagaaaagcgccgagaaaatcgaatatgagagatgaaatagcgcca |
9562049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 9561691 - 9561779
Alignment:
| Q |
15 |
gagacagaagggtgagaaggcagccactgccggagcgacagaatccaccaacacagcccactggagttcaaagagatgctagatctgat |
103 |
Q |
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| T |
9561691 |
gagacagaagggtgagaaggcaagcactgccggagcgacagaatccaccaacacaacccactggagttcaaagagatgctagatctgat |
9561779 |
T |
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