View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20060_low_11 (Length: 375)
Name: NF20060_low_11
Description: NF20060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20060_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 334
Target Start/End: Original strand, 50016728 - 50017049
Alignment:
| Q |
13 |
aatattactcctacatatcactgaaagataagaataaaagcacttcggatagttgcattttggcatgggaaaaactgctagagaaagttagaaatcacta |
112 |
Q |
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| T |
50016728 |
aatactactcctacatatcactgaaagataagaataaaagcacttcggatagttgcattttggcatgggaaaaactgctagagaaagttagaaatcacta |
50016827 |
T |
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| Q |
113 |
tcctttagtgttggatctaccattggaacgatgttatgggaacttttgtagattgtagcctaaatactggcaaacaatttcagggtatgattgctaacaa |
212 |
Q |
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| T |
50016828 |
tcctttagtgttgaatctaccattggaacgatgttatgggaacttttgtagattgtagcctaaatactggcaaacaatttcagggtatgattgctaacaa |
50016927 |
T |
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| Q |
213 |
gaagtaataatatgattgtaacagaagtggatgtttgctgccaaaggtggctcatcttaatttcaacacgtctattgtattgtataactaaaaatacact |
312 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50016928 |
gaagtaataatatgattgtaacaggagtggatgtttgctaccaaaggtggctcatcttaatttcaacacgtctattgtattgtataactaaaaatacact |
50017027 |
T |
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| Q |
313 |
aaaacttgtagacagtacacca |
334 |
Q |
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||||| | |||||||| ||||| |
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| T |
50017028 |
aaaacctatagacagtccacca |
50017049 |
T |
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