View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20060_low_2 (Length: 506)
Name: NF20060_low_2
Description: NF20060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20060_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 192 - 490
Target Start/End: Complemental strand, 25527819 - 25527521
Alignment:
| Q |
192 |
aacaagcagcaacggcggagccccagcctcctcctgaagaactccacacgcgtgtcacgtcattgattcgctccggcaacctcgacgctgcctctgccat |
291 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25527819 |
aacaagcagcaacggcggagcctcagcctcctcctgaagaactccacacgcgtgtcacgtcattgattcgctccggcaacctcgacgctgcctctgccat |
25527720 |
T |
|
| Q |
292 |
ggcccgccagtcggcgttctcagcaacgactcgtccgacggtgttcacctgcaacgccatcatcggtgccatgcaccgcgcaaaaagacacaacgaagct |
391 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25527719 |
ggcccgccagtcggcgttctcagcaacgaatcgtccgacggtgttcacctgcaacgccatcatcggtgccatgcaccgcgcaaaaagacacaacgaagct |
25527620 |
T |
|
| Q |
392 |
cttgatttgcacgagttcttctttaactcgtttaaaattactcctaacattgtctcttataactttatgatcaacgcatattgtgatgagggctgcatt |
490 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25527619 |
cttgatttgtacgagttcttctttaactcgtttaaaattactcctaacattgtctcttataactttatgatcaacgcatattgtgatgagggctgcatt |
25527521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 199 - 490
Target Start/End: Complemental strand, 25535841 - 25535550
Alignment:
| Q |
199 |
agcaacggcggagccccagcctcctcctgaagaactccacacgcgtgtcacgtcattgattcgctccggcaacctcgacgctgcctctgccatggcccgc |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25535841 |
agcaacggcggagccccagcctcctcctgaagaactccacacgcgcgtcagatcgttgattcgctccggcaacctcgacgctgcctctgccatggcccgc |
25535742 |
T |
|
| Q |
299 |
cagtcggcgttctcagcaacgactcgtccgacggtgttcacctgcaacgccatcatcggtgccatgcaccgcgcaaaaagacacaacgaagctcttgatt |
398 |
Q |
| |
|
|||||| ||||||||||||| |||||||| || |||||||||||||| || ||||| | ||| |||||||| || |||||| |||| ||||||||||||| |
|
|
| T |
25535741 |
cagtcgacgttctcagcaacaactcgtccaactgtgttcacctgcaatgctatcattgctgcaatgcaccgtgcgaaaagatacaatgaagctcttgatt |
25535642 |
T |
|
| Q |
399 |
tgcacgagttcttctttaactcgtttaaaattactcctaacattgtctcttataactttatgatcaacgcatattgtgatgagggctgcatt |
490 |
Q |
| |
|
|| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | ||||| || ||||||||||||||| ||||| |
|
|
| T |
25535641 |
tgtacgagttcttctttaacctctttaaaattgctcctaacattgtctcttataactttgttatcaatgcttattgtgatgagggccgcatt |
25535550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 256 - 490
Target Start/End: Original strand, 25514657 - 25514891
Alignment:
| Q |
256 |
gattcgctccggcaacctcgacgctgcctctgccatggcccgccagtcggcgttctcagcaacgactcgtccgacggtgttcacctgcaacgccatcatc |
355 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25514657 |
gattcgctccggcaacctcaacgctgcctctgccatggcccgccagtcggcgttctcagcaacgactcgtccgacggtgttcacctgcaacgccatcatc |
25514756 |
T |
|
| Q |
356 |
ggtgccatgcaccgcgcaaaaagacacaacgaagctcttgatttgcacgagttcttctttaactcgtttaaaattactcctaacattgtctcttataact |
455 |
Q |
| |
|
|||||||||| || |||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||| |||||| |
|
|
| T |
25514757 |
ggtgccatgctccacgcaaaaagacacaaccaagctcttgatttgtacgagttcttctttaacttgtttaaaattgttcctaacattgtctctcataact |
25514856 |
T |
|
| Q |
456 |
ttatgatcaacgcatattgtgatgagggctgcatt |
490 |
Q |
| |
|
|| | ||||| || ||||||||||||||| ||||| |
|
|
| T |
25514857 |
ttgttatcaatgcctattgtgatgagggccgcatt |
25514891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 25528000 - 25527879
Alignment:
| Q |
11 |
aattctgctgggggtagtatatataagaagaaagatgttagaagaattcatttcattttcatttcaaattagaaagtacgaaattttagggtttcaaact |
110 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25528000 |
aattctgctggtggtagtatatataagaagaaagatgttagaagaattcatttcattttcatttcaaaatagaaagtacgaaattttagggtttcaaact |
25527901 |
T |
|
| Q |
111 |
caacaatgtcactctgtcgcca |
132 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
25527900 |
caacaatgtcactctttcgcca |
25527879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University