View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20060_low_3 (Length: 494)

Name: NF20060_low_3
Description: NF20060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20060_low_3
NF20060_low_3
[»] chr5 (8 HSPs)
chr5 (13-494)||(11902628-11903109)
chr5 (12-152)||(11827622-11827762)
chr5 (12-155)||(11859754-11859897)
chr5 (64-155)||(12038513-12038604)
chr5 (70-230)||(11731348-11731508)
chr5 (65-155)||(11974974-11975064)
chr5 (295-373)||(11731226-11731301)
chr5 (12-56)||(12038627-12038671)


Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 13 - 494
Target Start/End: Original strand, 11902628 - 11903109
Alignment:
Q  13 ggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccagagttgaattaatctctctgcatcaatca 112  Q
    ||||| ||||| | |||||||| | ||| ||||||||||| |||  ||   ||||| ||||||||||||||||||| |||||||||||| ||||||||||    
T  11902628 ggaacaaagtcattgaaacaaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatca 11902727  T
Q  113 aataatcttctggaaacaatgaacaatatgcaaaacataacttgtgaagcattggaagatccttgtaatacataaacttgagctcttgtagaaacttcct 212  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11902728 aataatctcttggaaacaatgaacaatatgcaaaacataacttgtgaagcattggaagatccttgtaatacataaacttgagctcttgtagaaacttcct 11902827  T
Q  213 ctccacttctgctatttggtctgctgccaaaattgaaacaccaccagcactttggttcttcatcaacattgctacggtcacaatcgcaagagggactcca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11902828 ctccacttctgctatttggtctgctgccaaaattgaaacaccaccagcactttggttcttcatcaacattgctacggtcacaatcgcaagagggactcca 11902927  T
Q  313 ccacaatccttcacgagttcccattcgatgttgtcttgtttgttgttggttgaagttgaagttggcccacgaatttgttggaataacaattgagattcat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  11902928 ccacaatccttcacgagttcccattcgatgttgtcttgtttgttgttggttgaggttgaagtttgcccacgaatttgttggaataacaattgagattcat 11903027  T
Q  413 gtctgttaagccctttcaaaacatacctggcaacagaaatattatcggcgacatagttgctacgtgtagtgatgagtattgc 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11903028 gtctgttaagccctttcaaaacatacctggcaacagaaatattatcggcgacatagttgctacgtgtagtgatgagtattgc 11903109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 11827762 - 11827622
Alignment:
Q  12 aggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccagagttgaattaatctctctgcatcaatc 111  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  11827762 aggaacaaagtcttcgaaacaagcatgaccaaattgttgttctggattgataagaaacccttcaccagtccagagttgaatcaatctctctgcatcaatc 11827663  T
Q  112 aaataatcttctggaaacaatgaacaatatgcaaaacataa 152  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  11827662 aaataatcttctggaaacaatgaacaatatgcaaagcataa 11827622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 11859897 - 11859754
Alignment:
Q  12 aggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccagagttgaattaatctctctgcatcaatc 111  Q
    |||||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  11859897 aggaacaaagtctttgaaacaagcttgaccaaattgttgttctggattgataagaaacccttcagccgtccagagttgaatcaatctctctgcatcaatc 11859798  T
Q  112 aaataatcttctggaaacaatgaacaatatgcaaaacataactt 155  Q
    |||||||||||||||||||||||||||||||| || ||||||||    
T  11859797 aaataatcttctggaaacaatgaacaatatgcgaagcataactt 11859754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 12038604 - 12038513
Alignment:
Q  64 agaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaaacataactt 155  Q
    ||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||    
T  12038604 agaaatccttcagccgtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaactt 12038513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 70 - 230
Target Start/End: Complemental strand, 11731508 - 11731348
Alignment:
Q  70 ccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaaacataacttgtgaagcattggaa 169  Q
    |||||||||  ||| ||||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||| || || || | |    | ||||    
T  11731508 ccttcagcaaaccaaagttgaattaatctctcggcatcaatcaaatgatgttctggaaacaatgaacaaaatgcaaagcacaatttataacatgtgggaa 11731409  T
Q  170 gatccttgtaatacataaacttgagctcttgtagaaacttcctctccacttctgctatttg 230  Q
    |||||| ||||||  ||||||||||||| | |||||||| ||||||||| ||| |||||||    
T  11731408 gatcctcgtaatatctaaacttgagctcgtttagaaactccctctccacgtcttctatttg 11731348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 11974974 - 11975064
Alignment:
Q  65 gaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaaacataactt 155  Q
    |||| ||||| || ||| |||| ||||||||||||||  |||||||||||| |||||  ||||||||||||||| || ||||||| |||||    
T  11974974 gaaatccttctgctgtcaagagatgaattaatctctcgacatcaatcaaatgatcttgaggaaacaatgaacaaaattcaaaacaaaactt 11975064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 373
Target Start/End: Complemental strand, 11731301 - 11731226
Alignment:
Q  295 atcgcaagagggactccaccacaatccttcacgagttcccattcgatgttgtcttgtttgttgttggttgaagttgaag 373  Q
    ||||||||||| ||||| |||||||||||||| |  ||| || ||   |||||||||||||||||||||||||||||||    
T  11731301 atcgcaagaggcactcccccacaatccttcacaatctccaatccg---ttgtcttgtttgttgttggttgaagttgaag 11731226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 12038671 - 12038627
Alignment:
Q  12 aggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgg 56  Q
    |||||| ||||| | |||||||||| |||||||||||||||||||    
T  12038671 aggaacaaagtcgttgaaacaagctcgaccaaattgttgttctgg 12038627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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