View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20060_low_4 (Length: 461)
Name: NF20060_low_4
Description: NF20060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20060_low_4 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 6912758 - 6913206
Alignment:
| Q |
1 |
aaaaaaccaacattcaagttcttaatcatgttcttgaacnnnnnnnnnnnnnnnacaacctagttactcttgtaaactacgcataacaacctaaatatta |
100 |
Q |
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| T |
6912758 |
aaaaaaccaacattcaagttctttatcattttcttgaacttttttaacttgtttacaacctaggtactcttgtaaactacgcataacaacctaaatatta |
6912857 |
T |
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| Q |
101 |
ctatcagatagaagaaatttatgcatggagtttacttaaaggtagagcatatgaaatactcaaacatcggaacatacgtttaggaattgtgccttttgcc |
200 |
Q |
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| T |
6912858 |
ctatcagatagaagaaatttatgcatggagtttacttaaaggtagagcatatgaaatactcaaacatcggaacatacgtttaggaattgtgccttttgcc |
6912957 |
T |
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| Q |
201 |
tcaagcaactcactatgagctttagctgcttcaattttaatttttgaaacaagagcatcatattctgaaattgagaggtttgttccatttgatatagcag |
300 |
Q |
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| T |
6912958 |
tcaagcaactcactatgagctttagctgcttcaattttaatttttgaaacaagagcatcatattctgaaattgagaggtttgttccatttgatatagcag |
6913057 |
T |
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| Q |
301 |
ctttagccatctcatcctgcaactttagtttaagacttttttcctgtagataacatgtacacaacaatatgaaaaccatgtgacagtttggaatagcacc |
400 |
Q |
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| T |
6913058 |
ctttagccatctcatcctgcaacttttgtttaagacttttttcctgtagataacatgtacacaacaatatgaacaccatgtgacagtttggaatagcacc |
6913157 |
T |
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| Q |
401 |
atttcagaaacaaaaaacaaaccaccttgcatcatcttaccttttcctt |
449 |
Q |
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| T |
6913158 |
atttcagaaacaaaaaacaaaccaccttgcatcatcttaccttttcctt |
6913206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 85 - 390
Target Start/End: Complemental strand, 156715 - 156404
Alignment:
| Q |
85 |
aacaacctaaatattact----atcagatagaagaaatttatgcatggagtttacttaaaggtagagcatatgaaatactca--aacatcggaacatacg |
178 |
Q |
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| T |
156715 |
aacaacccaaatattactcagaatcagattaaagaaatttatgcatgaagttgattaaaagttagaggatatgagaaactcataaacatcacaacgtacg |
156616 |
T |
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| Q |
179 |
tttaggaattgtgccttttgcctcaagcaactcactatgagctttagctgcttcaattttaatttttgaaacaagagcatcatattctgaaattgagagg |
278 |
Q |
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| T |
156615 |
tttaggaattgtgccttttgcctcaatcaactcagtatgagctttagttgcttcactttttatctttgcaagaagagcatcatgttctgaaattgagagg |
156516 |
T |
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| Q |
279 |
tttgttccatttgatatagcagctttagccatctcatcctgcaactttagtttaagacttttttcctgtagataacatgtacacaacaatatgaaaacca |
378 |
Q |
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| T |
156515 |
ctagctccacttgatacaacagcatttgcaatctcatcctgcaacttttgcttaagacttctttcctgtagataacatgtacatcacaatatgaacacca |
156416 |
T |
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| Q |
379 |
tgtgacagtttg |
390 |
Q |
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| T |
156415 |
tgtgacagtttg |
156404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 143845 - 143917
Alignment:
| Q |
153 |
gaaatactcaaacatcggaacatacgtttaggaattgtgccttttgcctcaagcaactcactatgagctttag |
225 |
Q |
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| T |
143845 |
gaaaaactcaaacatcacaacatacggttacgaattgagcccatagcctcaagcaactcggtatgagctttag |
143917 |
T |
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