View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20060_low_5 (Length: 454)

Name: NF20060_low_5
Description: NF20060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20060_low_5
NF20060_low_5
[»] chr1 (4 HSPs)
chr1 (1-438)||(22382988-22383411)
chr1 (335-411)||(35592475-35592550)
chr1 (241-298)||(13344840-13344897)
chr1 (356-428)||(50571246-50571317)
[»] chr4 (4 HSPs)
chr4 (336-438)||(33560602-33560704)
chr4 (337-408)||(11271570-11271641)
chr4 (337-438)||(25318999-25319099)
chr4 (356-428)||(31012791-31012862)
[»] chr3 (4 HSPs)
chr3 (336-409)||(7298348-7298421)
chr3 (335-428)||(48089419-48089512)
chr3 (335-428)||(32523371-32523464)
chr3 (241-298)||(46864337-46864394)
[»] chr5 (3 HSPs)
chr5 (335-438)||(42439648-42439751)
chr5 (241-298)||(6988219-6988276)
chr5 (356-428)||(14299292-14299363)
[»] chr2 (3 HSPs)
chr2 (253-295)||(7632871-7632913)
chr2 (241-298)||(1763272-1763329)
chr2 (241-298)||(12110926-12110983)
[»] chr8 (1 HSPs)
chr8 (335-428)||(11791764-11791857)
[»] chr7 (4 HSPs)
chr7 (382-438)||(45004972-45005028)
chr7 (349-428)||(40491540-40491618)
chr7 (339-394)||(48917501-48917556)
chr7 (241-295)||(7169007-7169061)
[»] scaffold0172 (1 HSPs)
scaffold0172 (241-298)||(15258-15315)


Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 22382988 - 22383411
Alignment:
Q  1 tttgatgctgatgataccattttgacagctctaatgggtactgatatcgaagttatggttgcgattccgaatgtcatgttgagcaagattagtaacagtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22382988 tttgatgctgatgataccattttgacagctctaatgggtactgatatcgaagttatggttgcgattccgaatgtcatgttgagcaagattagtaacagtc 22383087  T
Q  101 ctatggatgctgattcttgggtttatgagaatgttactgcttacttgttcagaggtggtgtcagtatcaagttagttcagtactccttcaactttttaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||          ||||||    
T  22383088 ctatggatgctgattcttgggtttatgagaatgttactgcttacttgttcagaggtggtgtcaatatcaagttagttcagtact----------tttaat 22383177  T
Q  201 ctctgttttttattttcagttagtgcatgtttgtatctgcattgattttgtgaaattgattttatttaaaagtgatttgaacttaaagtggtttatgtct 300  Q
    |||||||||||||||||||||||||||||||||| ||| || |||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22383178 ctctgttttttattttcagttagtgcatgtttgtttctacagtgatt----gaaattgattttatttaaaagtgatttgaacttaaagtggtttatgtct 22383273  T
Q  301 tcatacatttacgttaaacaaaataagtttccgcgtaaaaatcatgtttagactcaaaaactacaaatcctaactttcagttagaatcaattctgaagtc 400  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22383274 tcatacatttacgttaaacaagataagtttccgcgtaaaaatcatgtttagactcaaaaactacaaatcctaactttcagttagaatcaattctgaagtc 22383373  T
Q  401 aatatcaattatattcgaaagcaaccaagcgtgtcaaa 438  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22383374 aatatcaattatattcgaaagcaaccaagcgtgtcaaa 22383411  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 411
Target Start/End: Complemental strand, 35592550 - 35592475
Alignment:
Q  335 gtaaaaatcatgtttagactcaaaaactacaaatcctaactttcagttagaatcaattctgaagtcaatatcaatta 411  Q
    |||||||| ||||||||| |||||| ||| |||||||| |||| ||||||||||||||||  |||||| ||||||||    
T  35592550 gtaaaaat-atgtttagagtcaaaagctaaaaatcctagctttaagttagaatcaattctagagtcaaaatcaatta 35592475  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 13344897 - 13344840
Alignment:
Q  241 attgattttgtgaaattgattttatttaaaagtgatttgaacttaaagtggtttatgt 298  Q
    |||||||||||  ||||||||||  |||||||||| |||||| ||||||| |||||||    
T  13344897 attgattttgtagaattgattttggttaaaagtgagttgaacgtaaagtgatttatgt 13344840  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 428
Target Start/End: Complemental strand, 50571317 - 50571246
Alignment:
Q  356 aaaaactacaaatcctaactttcagttagaatcaattctgaagtcaatatcaattatattcgaaagcaaccaa 428  Q
    ||||||||||||||||||| ||||  |||||||||||||||||  || |||||||  | |||| |||||||||    
T  50571317 aaaaactacaaatcctaac-ttcaagtagaatcaattctgaagataaaatcaatttaaatcgatagcaaccaa 50571246  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 438
Target Start/End: Original strand, 33560602 - 33560704
Alignment:
Q  336 taaaaatcatgtttagactcaaaaactacaaatcctaactttcagttagaatcaattctgaagtcaatatcaattatattcgaaagcaaccaagcgtgtc 435  Q
    |||||||||  ||||||||||||| |||||||||||| ||||| |||||||||||||||  || ||| ||||||| || |||| ||||||||| | ||||    
T  33560602 taaaaatcacttttagactcaaaagctacaaatcctagctttcggttagaatcaattctagaggcaaaatcaattctactcgagagcaaccaaacatgtc 33560701  T
Q  436 aaa 438  Q
    |||    
T  33560702 aaa 33560704  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 408
Target Start/End: Original strand, 11271570 - 11271641
Alignment:
Q  337 aaaaatcatgtttagactcaaaaactacaaatcctaactttcagttagaatcaattctgaagtcaatatcaa 408  Q
    |||| |||||||||||||||||| |||||||||||| |||  ||||||||||||||||| || ||| |||||    
T  11271570 aaaagtcatgtttagactcaaaagctacaaatcctagcttcaagttagaatcaattctggaggcaaaatcaa 11271641  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 438
Target Start/End: Complemental strand, 25319099 - 25318999
Alignment:
Q  337 aaaaatcatgtttagactcaaaaactacaaatcctaactttcagttagaatcaattctgaagtcaatatcaattatattcgaaagcaaccaagcgtgtca 436  Q
    ||||||||  ||||||||||||  |||||||||||| |||  ||||||||||||||||| || ||| ||||||| || |||| ||||||||| | |||||    
T  25319099 aaaaatcacatttagactcaaag-ctacaaatcctaccttcaagttagaatcaattctggagacaaaatcaattctactcgagagcaaccaaacatgtca 25319001  T
Q  437 aa 438  Q
    ||    
T  25319000 aa 25318999  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 428
Target Start/End: Original strand, 31012791 - 31012862
Alignment:
Q  356 aaaaactacaaatcctaactttcagttagaatcaattctgaagtcaatatcaattatattcgaaagcaaccaa 428  Q
    |||||||||||||||||  ||| ||| ||||||||||||||| |||| |||| || || |||| |||||||||    
T  31012791 aaaaactacaaatcctagttttgagt-agaatcaattctgaaatcaaaatcagttctactcgacagcaaccaa 31012862  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 7298348 - 7298421
Alignment:
Q  336 taaaaatcatgtttagactcaaaaactacaaatcctaactttcagttagaatcaattctgaagtcaatatcaat 409  Q
    ||||||||| | ||||||||||||||||||||||||| |||  |||||||||| |||||| || ||| ||||||    
T  7298348 taaaaatcacgattagactcaaaaactacaaatcctagcttcaagttagaatcgattctggagacaacatcaat 7298421  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 428
Target Start/End: Original strand, 48089419 - 48089512
Alignment:
Q  335 gtaaaaatcatgtttagactcaaaaactacaaatcctaactttcagttagaatcaattctgaagtcaatatcaattatattcgaaagcaaccaa 428  Q
    |||||||| | |||||||||||||||| |||||||||| |||   ||| |||||||||||  || ||| || ||||||| |||| |||||||||    
T  48089419 gtaaaaattacgtttagactcaaaaacgacaaatcctagcttaaggtttgaatcaattcttgaggcaaaattaattatactcgagagcaaccaa 48089512  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 428
Target Start/End: Original strand, 32523371 - 32523464
Alignment:
Q  335 gtaaaaatcatgtttagactcaaaaactacaaatcctaactttcagttagaatcaattctgaagtcaatatcaattatattcgaaagcaaccaa 428  Q
    ||||||||||  |||||| |||||| |||||||||||||||| ||  |||||  |||| || || ||| ||| ||| || ||||||||||||||    
T  32523371 gtaaaaatcaattttagaatcaaaagctacaaatcctaacttccaagtagaaataattatggaggcaaaatctattttactcgaaagcaaccaa 32523464  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 46864394 - 46864337
Alignment:
Q  241 attgattttgtgaaattgattttatttaaaagtgatttgaacttaaagtggtttatgt 298  Q
    ||||||||||   ||||||||||  ||||||||||||| ||| |||||||||||||||    
T  46864394 attgattttgcagaattgattttggttaaaagtgattttaacataaagtggtttatgt 46864337  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 438
Target Start/End: Original strand, 42439648 - 42439751
Alignment:
Q  335 gtaaaaatcatgtttagactcaaaaactacaaatcctaactttcagttagaatcaattctgaagtcaatatcaattatattcgaaagcaaccaagcgtgt 434  Q
    |||||||||| |||||||||||||| ||||| || ||| |||  ||||||||||||||||| ||  || ||||||| || ||  ||||||||||  ||||    
T  42439648 gtaaaaatcacgtttagactcaaaagctacagattctagcttcaagttagaatcaattctggaggaaaaatcaattctagtcacaagcaaccaaatgtgt 42439747  T
Q  435 caaa 438  Q
    ||||    
T  42439748 caaa 42439751  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 6988276 - 6988219
Alignment:
Q  241 attgattttgtgaaattgattttatttaaaagtgatttgaacttaaagtggtttatgt 298  Q
    ||||||||||| |||||||||||| |||||||| | ||||| ||||| || |||||||    
T  6988276 attgattttgtaaaattgattttaattaaaagtaagttgaatttaaaatgatttatgt 6988219  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 428
Target Start/End: Complemental strand, 14299363 - 14299292
Alignment:
Q  356 aaaaactacaaatcctaactttcagttagaatcaattctgaagtcaatatcaattatattcgaaagcaaccaa 428  Q
    ||||||||||||||||||| ||||  ||||||||||| | ||  ||| ||||||| ||||||||| |||||||    
T  14299363 aaaaactacaaatcctaac-ttcaagtagaatcaattttaaaagcaaaatcaattttattcgaaaacaaccaa 14299292  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 7632913 - 7632871
Alignment:
Q  253 aaattgattttatttaaaagtgatttgaacttaaagtggttta 295  Q
    |||||||||||| |||||||||||||||| |||||||||||||    
T  7632913 aaattgattttagttaaaagtgatttgaatttaaagtggttta 7632871  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 1763329 - 1763272
Alignment:
Q  241 attgattttgtgaaattgattttatttaaaagtgatttgaacttaaagtggtttatgt 298  Q
    ||||||||||| |||||||||||  |||||| ||| ||||| |||||||| |||||||    
T  1763329 attgattttgtaaaattgattttggttaaaattgagttgaatttaaagtgatttatgt 1763272  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 12110983 - 12110926
Alignment:
Q  241 attgattttgtgaaattgattttatttaaaagtgatttgaacttaaagtggtttatgt 298  Q
    ||||||||||| |||||||||||  |||||||||| |||||  ||||||| |||||||    
T  12110983 attgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgt 12110926  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 428
Target Start/End: Original strand, 11791764 - 11791857
Alignment:
Q  335 gtaaaaatcatgtttagactcaaaaactacaaatcctaactttcagttagaatcaattctgaagtcaatatcaattatattcgaaagcaaccaa 428  Q
    |||||||||| ||| |||||||||| |||||||||||| |||  || |||||||| || || || |||  |||||||||||| || ||||||||    
T  11791764 gtaaaaatcacgttgagactcaaaagctacaaatcctagcttgaaggtagaatcagttatggaggcaaattcaattatattcaaaggcaaccaa 11791857  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 45005028 - 45004972
Alignment:
Q  382 tagaatcaattctgaagtcaatatcaattatattcgaaagcaaccaagcgtgtcaaa 438  Q
    ||||||||||||||||| ||| ||||||| ||||||| ||||||||| | |||||||    
T  45005028 tagaatcaattctgaaggcaaaatcaattctattcgagagcaaccaaacatgtcaaa 45004972  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 428
Target Start/End: Complemental strand, 40491618 - 40491540
Alignment:
Q  349 tagactcaaaaactacaaatcctaactttcagttagaatcaattctgaagtcaatatcaattatattcgaaagcaaccaa 428  Q
    |||| |||||| ||||||| | ||||||  ||| ||| |||||||||||| ||| ||||||||| |||||||||||||||    
T  40491618 tagaatcaaaagctacaaaacttaacttcaagt-agagtcaattctgaaggcaaaatcaattatcttcgaaagcaaccaa 40491540  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 394
Target Start/End: Complemental strand, 48917556 - 48917501
Alignment:
Q  339 aaatcatgtttagactcaaaaactacaaatcctaactttcagttagaatcaattct 394  Q
    ||||||||||||||||||||| | | |||||||| ||||  |||||||||||||||    
T  48917556 aaatcatgtttagactcaaaagcaataaatcctagctttacgttagaatcaattct 48917501  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 7169061 - 7169007
Alignment:
Q  241 attgattttgtgaaattgattttatttaaaagtgatttgaacttaaagtggttta 295  Q
    ||||||||| |||||||||||||  |||||||||| |||||  ||||||||||||    
T  7169061 attgattttttgaaattgattttggttaaaagtgagttgaatgtaaagtggttta 7169007  T

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Target: scaffold0172 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 15258 - 15315
Alignment:
Q  241 attgattttgtgaaattgattttatttaaaagtgatttgaacttaaagtggtttatgt 298  Q
    ||||||||||| |||||||||||  |||||||||| |||||  ||||||| |||||||    
T  15258 attgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgt 15315  T

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