View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20060_low_7 (Length: 419)
Name: NF20060_low_7
Description: NF20060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20060_low_7 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 25827221 - 25827625
Alignment:
| Q |
1 |
ataatactcgtgtttttatatctatcattttatagtaatgataaattacaagattcgtcaaccacgtagaaaggattaaatggcataagttttcaatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25827221 |
ataatactcgtgtttttatatctatcattttatagtaatgataaattacaagattcgtcaaccacgtagaaaggattaaatggcataagttttcaatcca |
25827320 |
T |
|
| Q |
101 |
attcacttgtgttcaattaactattctagtatgaaatctacataaattaaaaatttgcaattttatctagaagttagtcttgagaccattatcttcgaac |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
25827321 |
attcacttgtgttcgattaactattctagtatgaaatctacgtaaattaaaaatttgcaattttatctataagttagtcttgagaccattatcttcgaac |
25827420 |
T |
|
| Q |
201 |
gaaaggcagtattatcaatattctcttagaactgaagttagtatttggagaattctcatagaatggaagttagtagttcaaagattctaataaaatagta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
25827421 |
gaaaggcagtattatcaatattctcttagaacttaaattagtatttggagaattcttatagaatggaagttagtagttcaaagattctcataaaacagta |
25827520 |
T |
|
| Q |
301 |
gttagtatttagaagattctcgtaaaacagaagttagtcttaggaagattacgaaagaatggaagtaactcattggaagattctcatagaacgatagtta |
400 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25827521 |
gttagtatttagaagattctcgtagaacagaagttagtcttaggaagattacgaaagaatggaagttactcattggaagattctcatagaacgatagtta |
25827620 |
T |
|
| Q |
401 |
gtatt |
405 |
Q |
| |
|
||||| |
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|
| T |
25827621 |
gtatt |
25827625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 25827666 - 25827706
Alignment:
| Q |
281 |
aagattctaataaaatagtagttagtatttagaagattctc |
321 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
25827666 |
aagattctaataaaatgttagttagtatttggaagattctc |
25827706 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 84 - 405
Target Start/End: Original strand, 28072484 - 28072805
Alignment:
| Q |
84 |
cataagttttcaatccaattcacttgtgttcaattaactattctagtatgaaatctacataaattaaaaatttgcaattttatctagaagttagtcttga |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||||| | ||||||||||| | |
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|
| T |
28072484 |
cataagttttcaatccaattcacttgtgttccattaattattctagtatgaaatcaacataaattcaaaatttgcaattttatttggaagttagtctaaa |
28072583 |
T |
|
| Q |
184 |
gaccattatcttcgaacgaaaggcagtattatcaatattctcttagaactgaagttagtatttggagaattctcatagaatggaagttagtagttcaaag |
283 |
Q |
| |
|
|| |||| ||||||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| ||| ||| |
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|
| T |
28072584 |
gaacattctcttcgaacgaaaggtagtattatcaagattctcttggaactcaagttagtctttggagaattctcatagaacggaagttagtatttcgaag |
28072683 |
T |
|
| Q |
284 |
attctaataaaatagtagttagtatttagaagattctcgtaaaacagaagttagtcttaggaagattacgaaagaatggaagtaactcattggaagattc |
383 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| | | ||||||||||| |
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|
| T |
28072684 |
attctcataaaacagtagttagtatttagaagattctcgtagaacggaagttagtcttaggaagattatcaaagaatggaagttattttttggaagattc |
28072783 |
T |
|
| Q |
384 |
tcatagaacgatagttagtatt |
405 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
28072784 |
tcatagaacgatagttagtatt |
28072805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 28072394 - 28072459
Alignment:
| Q |
16 |
ttatatctatcattttatagtaatgataaattacaagattcgtcaaccacgtagaaaggattaaat |
81 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
28072394 |
ttatatcaatcattttatagtaataataaattacaagattcatcaaccacgtacaaaggattaaat |
28072459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 83 - 351
Target Start/End: Complemental strand, 52309194 - 52308926
Alignment:
| Q |
83 |
gcataagttttcaatccaattcacttgtgttcaattaactattctagtatgaaatctacataaattaaaaatttgcaattttatctagaagttagtcttg |
182 |
Q |
| |
|
|||||| ||| |||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| ||| | |||||||||||| |
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|
| T |
52309194 |
gcataaatttccaatccaattcatttgtgttcaattgactattctagtatgaaatcaacataaattcaaaatttgcaattgtatgtggaagttagtctta |
52309095 |
T |
|
| Q |
183 |
agaccattatcttcgaacgaaaggcagtattatcaatattctcttagaactgaagttagtatttggagaattctcatagaatggaagttagtagttcaaa |
282 |
Q |
| |
|
||| ||| | ||| ||| |||| |||||||| || |||||||| ||||| ||| ||| ||||||| |||||||||||| |||||| |||| |||||| |
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|
| T |
52309094 |
agaagatttttttcaaacaaaagttagtattatgaagattctcttggaactcaagatagcctttggaggattctcatagaacggaagtcagtatttcaaa |
52308995 |
T |
|
| Q |
283 |
gattctaataaaatagtagttagtatttagaagattctcgtaaaacagaagttagtcttaggaagatta |
351 |
Q |
| |
|
| |||| |||||| | |||||||||||||||||||||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
52308994 |
gtttctcataaaacaatagttagtatttagaagattctcgtagaacggaagttagtcttaggaatatta |
52308926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 13862542 - 13862645
Alignment:
| Q |
306 |
tatttagaagattctcgtaaaacagaagttagtcttaggaagattacgaaagaatggaagtaactcattggaagattct-catagaacgatagttagtat |
404 |
Q |
| |
|
||||||||||||||||||| ||| | ||||| |||||||||||||| |||||||| |||| | || | |||||||||| |||||| |||| ||| ||| |
|
|
| T |
13862542 |
tatttagaagattctcgtagaacgggagttattcttaggaagattatcaaagaatgaaagttagtcttaggaagattctaaatagaatgataattaatat |
13862641 |
T |
|
| Q |
405 |
ttga |
408 |
Q |
| |
|
|||| |
|
|
| T |
13862642 |
ttga |
13862645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 13862315 - 13862380
Alignment:
| Q |
16 |
ttatatctatcattttatagtaatgataaattacaagattcgtcaaccacgtagaaaggattaaat |
81 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||| | |||||||| || |||||||||||| |
|
|
| T |
13862315 |
ttatatcaatcattttatagtaaaaataaattacaagactaatcaaccacatacaaaggattaaat |
13862380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 52309275 - 52309218
Alignment:
| Q |
24 |
atcattttatagtaatgataaattacaagattcgtcaaccacgtagaaaggattaaat |
81 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| |||||||| || |||||||||||| |
|
|
| T |
52309275 |
atcattttatagtaacaataaattacaaaattcatcaaccacatacaaaggattaaat |
52309218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 395
Target Start/End: Complemental strand, 52308866 - 52308739
Alignment:
| Q |
267 |
aagttagtagttcaaagattctaataaaatagtagttagtatttagaagattctcgtaaaacagaagttagtcttaggaagattacgaaagaatggaagt |
366 |
Q |
| |
|
|||||||| || ||||||||| |||||| | ||| |||||||||||| |||||| || ||| || ||||||||| |||||| ||||||||||| | |
|
|
| T |
52308866 |
aagttagtccttgaaagattctcataaaacaatagatagtatttagaatattctcatataacgaaaattagtcttaagaagatcctcaaagaatggaatt |
52308767 |
T |
|
| Q |
367 |
aactcattggaagattctcatagaacgat |
395 |
Q |
| |
|
|| || | ||||| ||||||||||||||| |
|
|
| T |
52308766 |
aagtcttaggaag-ttctcatagaacgat |
52308739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 366
Target Start/End: Complemental strand, 16555080 - 16554966
Alignment:
| Q |
252 |
attctcatagaatggaagttagtagttcaaagattctaataaaatagtagttagtatttagaagattctcgtaaaacagaagttagtcttaggaagatta |
351 |
Q |
| |
|
|||||||||||||||| |||||| || ||||||||| ||| || | |||||||| ||||||||||||| || |||||| |||| ||||| ||||||| |
|
|
| T |
16555080 |
attctcatagaatggaggttagtctttgaaagattcttatagaacaatagttagtctttagaagattcttatagaacagatgttaatcttaagaagattc |
16554981 |
T |
|
| Q |
352 |
cgaaagaatggaagt |
366 |
Q |
| |
|
||||||||||||| |
|
|
| T |
16554980 |
tcaaagaatggaagt |
16554966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 403
Target Start/End: Complemental strand, 45634701 - 45634578
Alignment:
| Q |
280 |
aaagattctaataaaatagtagttagtatttagaagattctcgtaaaacagaagttagtcttaggaagattacgaaagaatggaagtaactcattggaag |
379 |
Q |
| |
|
||||||||| ||| || | ||||||||||||||||||||||| | || ||||| ||||||| |||||| |||||||| |||| | || | ||||| |
|
|
| T |
45634701 |
aaagattctcatagaacaatagttagtatttagaagattctcaaagaagggaagtaggtcttagaaagattcttaaagaatgaaagttagtcttaggaag |
45634602 |
T |
|
| Q |
380 |
attctcatagaacgatagttagta |
403 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
45634601 |
attctcatagatcgatagttagta |
45634578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 350
Target Start/End: Original strand, 18814215 - 18814266
Alignment:
| Q |
299 |
tagttagtatttagaagattctcgtaaaacagaagttagtcttaggaagatt |
350 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||| ||||| |||| |
|
|
| T |
18814215 |
tagttagtatttagaagattctcatataacagaagttagtcataggacgatt |
18814266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 350
Target Start/End: Complemental strand, 1031832 - 1031708
Alignment:
| Q |
227 |
tagaactgaagttagtatttggagaattctcatagaatggaagttagtagttcaaagattctaataaaatagtagttagtatttagaagattctcgta-a |
325 |
Q |
| |
|
|||||| ||||||||| ||| || |||||||||||| |||||||||| || ||||||| | ||| |||| |||||| | ||| |||||||||||| | |
|
|
| T |
1031832 |
tagaacagaagttagtctttagaagattctcatagaacggaagttagtctttgaaagattttcatagaataatagttaatctttgaaagattctcgtaga |
1031733 |
T |
|
| Q |
326 |
aacagaagttagtcttaggaagatt |
350 |
Q |
| |
|
|| ||| ||||||||| ||||||| |
|
|
| T |
1031732 |
aagagaggttagtctttagaagatt |
1031708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 351
Target Start/End: Complemental strand, 1031710 - 1031611
Alignment:
| Q |
252 |
attctcatagaatggaagttagtagttcaaagattctaataaaatagtagttagtatttagaagattctcgtaaaacagaagttagtcttaggaagatta |
351 |
Q |
| |
|
|||||||||||| ||||||||| || || ||||| ||| ||| | ||||||| |||||||||||||| ||| || |||||||||||| | ||||||| |
|
|
| T |
1031710 |
attctcatagaagggaagttagcctttgaatgattcctatagaatggaagttagtctttagaagattctcataagacggaagttagtctttgaaagatta |
1031611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 351
Target Start/End: Original strand, 21556108 - 21556199
Alignment:
| Q |
260 |
agaatggaagttagtagttcaaagattctaataaaatagtagttagtatttagaagattctcgtaaaacagaagttagtcttaggaagatta |
351 |
Q |
| |
|
|||||| |||||||| || |||||||||||||||| ||||||| |||||||||||||| | ||| |||||||||||| |||||||| |
|
|
| T |
21556108 |
agaatgaaagttagtctttgaaagattctaataaaacgaaagttagtctttagaagattctccgataacggaagttagtctttagaagatta |
21556199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 21556776 - 21556860
Alignment:
| Q |
256 |
tcatagaatggaagttagtagttcaaagattctaataaaatagtagttagtatttagaagattctcgtaaaacagaagttagtct |
340 |
Q |
| |
|
|||||||||||||||||| || || |||| | ||| || || ||||||| |||||||||||||| || ||| ||||||||||| |
|
|
| T |
21556776 |
tcatagaatggaagttagcctttgaatgatttttatagaacagaagttagtctttagaagattctcatagaacggaagttagtct |
21556860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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