View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20061_high_10 (Length: 398)
Name: NF20061_high_10
Description: NF20061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20061_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 26410478 - 26410853
Alignment:
| Q |
18 |
caaacaatctaccacctcttcaaaccctaacaataaccataacaaacccaaacacagaactaaaccacgccaccgacgaatcctacacgttaataatcac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26410478 |
caaacaatctaccacctcttcaaaccctaacaataaccataacaaacccaaacacagaactaaaccacgccaccgacgaatcctacacgttaataatcac |
26410577 |
T |
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| Q |
118 |
aactcccaccgccaccttaaccgccgtaacttcatggggagccatgcatggtttagaaacattctcacagcttgcatggggaaacccaacgcgcgtagct |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26410578 |
aactcccaccgccaccttaaccgctgtaacttcatggggagccatgcatggtttagaaacattctcacagcttgcatggggaaacccaacgcgcgtggct |
26410677 |
T |
|
| Q |
218 |
gtgaacgtgcgtgttaacgacgcgccgttgttcggtcatcgcggtatcatgttagatacttcaagaaactactatccagtgaaggatttgttaagaacta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26410678 |
gtgaacgtgcgtgttaacgacgcgccgttgttcggtcatcgcggtattatgttagatacttcaagaaactactatccagtgaaggatttgttaagaacta |
26410777 |
T |
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| Q |
318 |
ttgaagctatgagtatgaataagttgaatgtgtttcattggcatgtaactgattctcattcttttcctttgcttct |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26410778 |
ttgaagctatgagtatgaataagttgaatgtgtttcattggcatgtaactgattctcattcttttcctttgattct |
26410853 |
T |
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