View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20061_high_2 (Length: 891)

Name: NF20061_high_2
Description: NF20061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20061_high_2
NF20061_high_2
[»] chr2 (17 HSPs)
chr2 (7-873)||(43131254-43132095)
chr2 (228-320)||(4978776-4978868)
chr2 (228-320)||(4996684-4996776)
chr2 (222-330)||(27896454-27896562)
chr2 (226-329)||(1870509-1870611)
chr2 (228-311)||(7304352-7304434)
chr2 (240-324)||(44065744-44065828)
chr2 (229-329)||(13738410-13738510)
chr2 (229-329)||(13835835-13835934)
chr2 (227-294)||(6315883-6315950)
chr2 (230-329)||(34501609-34501707)
chr2 (279-341)||(36766699-36766764)
chr2 (252-314)||(38193709-38193772)
chr2 (222-254)||(33635181-33635213)
chr2 (225-320)||(5525309-5525404)
chr2 (227-329)||(23453340-23453443)
chr2 (225-294)||(41436319-41436388)
[»] scaffold0299 (1 HSPs)
scaffold0299 (226-329)||(18031-18135)
[»] chr5 (21 HSPs)
chr5 (225-329)||(6102823-6102926)
chr5 (229-311)||(28511182-28511265)
chr5 (229-329)||(16802026-16802125)
chr5 (225-324)||(30840618-30840716)
chr5 (240-329)||(12036323-12036411)
chr5 (226-294)||(7609590-7609657)
chr5 (226-292)||(1447606-1447672)
chr5 (229-329)||(15139185-15139281)
chr5 (228-329)||(3600108-3600208)
chr5 (252-297)||(14044727-14044772)
chr5 (229-329)||(14152487-14152587)
chr5 (229-294)||(22293982-22294047)
chr5 (228-296)||(14863334-14863401)
chr5 (226-317)||(39034478-39034569)
chr5 (263-314)||(2835650-2835701)
chr5 (225-283)||(6830262-6830320)
chr5 (227-326)||(7224035-7224133)
chr5 (226-296)||(2611197-2611266)
chr5 (198-296)||(11320094-11320190)
chr5 (223-296)||(8435049-8435122)
chr5 (244-329)||(11815924-11816009)
[»] chr4 (28 HSPs)
chr4 (226-329)||(34236175-34236278)
chr4 (226-304)||(48202480-48202558)
chr4 (225-329)||(16831116-16831219)
chr4 (229-325)||(55090779-55090874)
chr4 (227-329)||(53142777-53142879)
chr4 (228-329)||(20775069-20775170)
chr4 (229-314)||(44740877-44740963)
chr4 (228-329)||(51100041-51100143)
chr4 (226-297)||(27284067-27284138)
chr4 (245-297)||(2565458-2565510)
chr4 (229-329)||(50101295-50101395)
chr4 (226-297)||(2824863-2824934)
chr4 (226-329)||(2908226-2908328)
chr4 (234-297)||(12094961-12095024)
chr4 (226-297)||(52837314-52837385)
chr4 (244-329)||(5645662-5645747)
chr4 (232-329)||(9119242-9119339)
chr4 (244-297)||(19480550-19480603)
chr4 (259-328)||(32325053-32325121)
chr4 (226-331)||(41142307-41142412)
chr4 (240-324)||(19248898-19248981)
chr4 (224-296)||(31647715-31647786)
chr4 (250-329)||(4860137-4860215)
chr4 (228-267)||(18744893-18744932)
chr4 (228-282)||(35808568-35808621)
chr4 (256-325)||(14347141-14347209)
chr4 (229-294)||(30694284-30694349)
chr4 (272-329)||(45921354-45921411)
[»] chr1 (23 HSPs)
chr1 (245-329)||(27513-27596)
chr1 (226-320)||(33148155-33148249)
chr1 (244-338)||(39238844-39238938)
chr1 (228-329)||(34382648-34382748)
chr1 (249-329)||(35876767-35876847)
chr1 (228-320)||(49731186-49731278)
chr1 (275-341)||(35873495-35873561)
chr1 (244-329)||(11449073-11449158)
chr1 (229-297)||(13969146-13969214)
chr1 (224-294)||(31884510-31884579)
chr1 (234-361)||(33148902-33149027)
chr1 (226-296)||(38597475-38597545)
chr1 (256-329)||(31160752-31160824)
chr1 (229-297)||(26890115-26890183)
chr1 (256-324)||(28490669-28490736)
chr1 (224-296)||(40391266-40391337)
chr1 (233-297)||(46295918-46295982)
chr1 (192-259)||(17644838-17644905)
chr1 (227-286)||(36160564-36160623)
chr1 (226-259)||(5069698-5069731)
chr1 (226-295)||(27742549-27742617)
chr1 (224-261)||(48887787-48887824)
chr1 (241-294)||(50127398-50127451)
[»] chr8 (20 HSPs)
chr8 (227-329)||(18131188-18131289)
chr8 (225-302)||(30924208-30924284)
chr8 (228-329)||(3137397-3137498)
chr8 (229-329)||(32881111-32881211)
chr8 (226-329)||(33621367-33621464)
chr8 (226-329)||(10451893-10451997)
chr8 (256-329)||(40607324-40607396)
chr8 (225-329)||(34678222-34678325)
chr8 (229-297)||(43917585-43917653)
chr8 (228-292)||(44655286-44655350)
chr8 (250-329)||(4989715-4989793)
chr8 (99-166)||(18117406-18117473)
chr8 (228-297)||(10029159-10029228)
chr8 (233-329)||(18200696-18200792)
chr8 (229-329)||(35901431-35901531)
chr8 (226-329)||(11150918-11151020)
chr8 (244-294)||(6270199-6270249)
chr8 (249-319)||(20821908-20821978)
chr8 (223-320)||(37529978-37530078)
chr8 (228-277)||(27162832-27162881)
[»] chr6 (19 HSPs)
chr6 (228-297)||(10008190-10008259)
chr6 (228-297)||(27082308-27082377)
chr6 (228-320)||(2911491-2911583)
chr6 (197-329)||(5611144-5611276)
chr6 (228-329)||(9213059-9213160)
chr6 (226-329)||(6770828-6770932)
chr6 (229-297)||(18493241-18493309)
chr6 (226-329)||(32800199-32800303)
chr6 (250-329)||(2613367-2613448)
chr6 (256-329)||(28048756-28048828)
chr6 (226-286)||(31223190-31223251)
chr6 (233-293)||(12677822-12677882)
chr6 (225-297)||(17835023-17835095)
chr6 (233-293)||(19659665-19659725)
chr6 (225-269)||(30396454-30396498)
chr6 (225-260)||(20208193-20208228)
chr6 (225-260)||(22102216-22102251)
chr6 (243-329)||(20208028-20208113)
chr6 (243-329)||(22102051-22102136)
[»] chr7 (26 HSPs)
chr7 (226-338)||(47445362-47445474)
chr7 (228-329)||(8656291-8656393)
chr7 (226-320)||(16979937-16980031)
chr7 (228-294)||(37928297-37928363)
chr7 (225-329)||(39786467-39786571)
chr7 (228-325)||(47537423-47537519)
chr7 (227-294)||(23142702-23142770)
chr7 (226-329)||(24937827-24937929)
chr7 (228-318)||(41760365-41760455)
chr7 (232-311)||(34834696-34834773)
chr7 (244-329)||(8896613-8896698)
chr7 (226-294)||(7833794-7833862)
chr7 (228-320)||(22931882-22931974)
chr7 (229-341)||(33194720-33194832)
chr7 (248-320)||(34993152-34993224)
chr7 (244-296)||(45907082-45907134)
chr7 (226-325)||(12810166-12810265)
chr7 (231-324)||(37532574-37532668)
chr7 (243-329)||(39386917-39387003)
chr7 (229-293)||(16685729-16685794)
chr7 (229-293)||(17659965-17660030)
chr7 (248-297)||(23317845-23317894)
chr7 (276-329)||(25780245-25780298)
chr7 (232-293)||(26241656-26241717)
chr7 (244-297)||(33988492-33988545)
chr7 (236-320)||(46300678-46300762)
[»] scaffold0039 (1 HSPs)
scaffold0039 (225-297)||(30034-30106)
[»] chr3 (22 HSPs)
chr3 (229-313)||(4490779-4490862)
chr3 (244-320)||(29032425-29032501)
chr3 (226-294)||(48338808-48338876)
chr3 (229-329)||(34228273-34228372)
chr3 (231-293)||(37043037-37043099)
chr3 (228-329)||(45408684-45408784)
chr3 (231-329)||(55446733-55446830)
chr3 (231-329)||(2127368-2127461)
chr3 (229-318)||(2379631-2379719)
chr3 (229-294)||(4020096-4020161)
chr3 (227-296)||(15671165-15671233)
chr3 (225-329)||(42788343-42788448)
chr3 (243-328)||(54801346-54801431)
chr3 (257-329)||(41287898-41287969)
chr3 (241-296)||(35322019-35322074)
chr3 (234-292)||(31069612-31069670)
chr3 (232-294)||(31494055-31494117)
chr3 (226-296)||(42163655-42163724)
chr3 (226-296)||(44291278-44291347)
chr3 (229-297)||(6785841-6785910)
chr3 (230-294)||(26613115-26613180)
chr3 (228-308)||(40491240-40491320)
[»] scaffold0034 (1 HSPs)
scaffold0034 (224-296)||(22472-22543)
[»] scaffold0017 (1 HSPs)
scaffold0017 (229-267)||(31466-31504)


Alignment Details
Target: chr2 (Bit Score: 681; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 7 - 873
Target Start/End: Complemental strand, 43132095 - 43131254
Alignment:
Q  7 agaagcaaagggaaataattcatgatttaaaataaaatggcctggccttaaagcaatatgaaccttcacaaatgttagacataattataattatgctcac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  43132095 agaagcaaagggaaataattcatgatttaaaataaaatggcctagccttaaagcaatatgaaccttcacaaatgttagacataattataattatgctcat 43131996  T
Q  107 catatcgaattgaattgtcatttcaagacatgaaattgaggtggatcaaatacgttgtgattctaaatattcttattttcaacggttaaattaaggagaa 206  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||    
T  43131995 catatcgaattga-ttgtcatttcaagacatgaaattgaggtggatcaaatacgttgtgattctaaatattctaattttcaacagttaaactaaggagaa 43131897  T
Q  207 tattagccaatatcgttgaggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttac 306  Q
    ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43131896 tattaaccaatgtcgttgaggcattgattaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttac 43131797  T
Q  307 atttttaagacaaattttttattcaaggattcttttaactagtagcaagacccttaaactagcagcagtaatgtcttattggatagttccactccactta 406  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43131796 atttttaagacaaaatttttattcaaggattcttt-aactagtagcaagacccttaaactagcagcagtaatgtcttattggatagttccactccactta 43131698  T
Q  407 aacatagtagccagtgaatgtaaatcctctgccaactatctcacccccacaataccaaagataacactcaagtccgaataaagcagctgtgccaattttc 506  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43131697 aacatagtagccagtaaatgtaaatcctctgccaactatctcacccccacaataccaaagataacactcaagtccgaataaagcagctgtgccaattttc 43131598  T
Q  507 tccatgtttaactcattcatgttattcattatgttcttagcagagtccaattccttccagaatgaatcgtaacgatgaggaatactgcnnnnnnnnnnnn 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  43131597 tccatgtttaactcattcatgttattcattatgttcttagcagagtccaattccttccagaatgaatcgtaacgatgaggaatactg-------taaaac 43131505  T
Q  607 nnnntaacaagttcaataaatatttcctccgtctcattataagtgtctcattttagttgtacgtaattcattcatatatatatgcaacaaacctggcaag 706  Q
        |||||||||||||| |||||||||||              |||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  43131504 aaaataacaagttcaatatatatttcctcc--------------gtctcattttagttgtacgtaattcattc--atatatatgcaacaaacctggcaag 43131421  T
Q  707 tcgagtatagaacaattgtttggctagtgattggcacttttcaatagtaggtggttcttggacatagtgtttgttcctctccatcaacagcttgaaatgt 806  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43131420 tcgagtatagaacaattgtttggccagtgattgacacttttcaatagtaggtggttcttggacatggtgtttgttcctctccatcaacagcttgaaatgt 43131321  T
Q  807 gaatttatatggtttgccacttctgctgatgcttgagtcgcctttgattgcagctcaggaatctttg 873  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43131320 gaatttatatggtttgccacttctgctgatgcttgagtcgcctttgattgcagctcaggaatctttg 43131254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 228 - 320
Target Start/End: Complemental strand, 4978868 - 4978776
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 320  Q
    ||||||||||||| |||||| || |||||||||||||||| || ||||||| ||||||||||||||||||  | |||| ||||| ||||||||    
T  4978868 cattggttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaa 4978776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 228 - 320
Target Start/End: Complemental strand, 4996776 - 4996684
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 320  Q
    ||||||||||||| |||||| || |||||||||||||||| || ||||||| ||||||||||||||||||  | |||| ||||| ||||||||    
T  4996776 cattggttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaa 4996684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 222 - 330
Target Start/End: Original strand, 27896454 - 27896562
Alignment:
Q  222 ttgaggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaat 321  Q
    |||||||| ||||||||||||||||| ||||||||||| || |||| || ||||||||||||||  ||||||||||  | |||| |||| ||| ||||||    
T  27896454 ttgaggcagtggttaaacaaccaaaataagtaagttttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaat 27896553  T
Q  322 tttttattc 330  Q
    ||| |||||    
T  27896554 tttctattc 27896562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 226 - 329
Target Start/End: Complemental strand, 1870611 - 1870509
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttt 325  Q
    |||||||||||| |||| ||||||||||| ||||||||||||  | ||||||||||||||| |||||||||  || |||| ||||| ||||||||||||     
T  1870611 ggcattggttaagcaacaaaaacaagtaactttttataaaaaaat-gtgtaattattacttaatcaaaagtcaaagcttatattttcaagacaaattttc 1870513  T
Q  326 tatt 329  Q
    ||||    
T  1870512 tatt 1870509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 7304434 - 7304352
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttt 311  Q
    ||||||||||||||| ||||||| |||| ||||||||||| |||||||||||||||||| || |||| || |||||||||||||    
T  7304434 cattggttaaacaac-aaaacaaataagattttataaaaacgtagtgtaattattacttcattaaaaataaaaacttacatttt 7304352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 240 - 324
Target Start/End: Complemental strand, 44065828 - 44065744
Alignment:
Q  240 aaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttt 324  Q
    ||||||||||||||| ||| || ||||| ||||||| |||||||||| || ||||||| ||||||||||||| ||| ||||||||    
T  44065828 aaccaaaacaagtaactttgtacaaaaaagtagtgtgattattacttcattaaaagtaaaaacttacattttcaaggcaaatttt 44065744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 229 - 329
Target Start/End: Complemental strand, 13738510 - 13738410
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttat 328  Q
    ||||||||| || ||||||||||||||||||||||||||  | ||||||| ||||||| |||| |||||  | |||| ||||| || ||||| |||||||    
T  13738510 attggttaagcatccaaaacaagtaagtttttataaaaaaattgtgtaatcattactttatcagaagtaacatcttatattttcaaaacaaaatttttat 13738411  T
Q  329 t 329  Q
    |    
T  13738410 t 13738410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 329
Target Start/End: Original strand, 13835835 - 13835934
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttat 328  Q
    ||||||||| ||| ||||| || ||| ||||||||||||  ||||||||||||||||| || ||||||  ||||||| ||||| |||||| ||||| |||    
T  13835835 attggttaagcaagcaaaataaataattttttataaaaaa-tagtgtaattattacttaataaaaagtcaaaacttatattttcaagacagattttctat 13835933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 6315883 - 6315950
Alignment:
Q  227 gcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 294  Q
    |||||||||||||| ||||||||| ||| ||||| ||||||  | ||||||| |||||||||||||||    
T  6315883 gcattggttaaacatccaaaacaaataaatttttgtaaaaaaattgtgtaatcattacttgatcaaaa 6315950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 230 - 329
Target Start/End: Complemental strand, 34501707 - 34501609
Alignment:
Q  230 ttggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    |||||||| |||||||| ||| ||| ||||||||||||  | ||||||||||||||| || |||| |  ||| ||| ||||||||||||| |||||||||    
T  34501707 ttggttaagcaaccaaatcaaataactttttataaaaaatt-gtgtaattattacttaataaaaaatcaaaaattatatttttaagacaacttttttatt 34501609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 36766764 - 36766699
Alignment:
Q  279 tattacttgatcaaaagtataaactt---acatttttaagacaaattttttattcaaggattcttt 341  Q
    |||||||||||||||||||  |||||   ||||||| ||||||||||||||||||| |||||||||    
T  36766764 tattacttgatcaaaagtaacaacttgttacattttcaagacaaattttttattcatggattcttt 36766699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 38193772 - 38193709
Alignment:
Q  252 taagtttttat-aaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaa 314  Q
    ||||||||||| ||||| ||||||||||||||| || ||||||| || ||||||||||||||||    
T  38193772 taagtttttatgaaaaaagtagtgtaattattatttcatcaaaaataaaaacttacatttttaa 38193709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 33635181 - 33635213
Alignment:
Q  222 ttgaggcattggttaaacaaccaaaacaagtaa 254  Q
    |||||||||||||||||||||||||||||||||    
T  33635181 ttgaggcattggttaaacaaccaaaacaagtaa 33635213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 320
Target Start/End: Complemental strand, 5525404 - 5525309
Alignment:
Q  225 aggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 320  Q
    ||||||||||||| |||| |||| |||||||||||||  |||| ||||| |||| |||| ||| ||||| |||  | ||||| |||| ||||||||    
T  5525404 aggcattggttaagcaactaaaataagtaagtttttaataaaaagtagtataatcattatttggtcaaatgtaacatcttacgttttcaagacaaa 5525309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 329
Target Start/End: Original strand, 23453340 - 23453443
Alignment:
Q  227 gcattggttaaacaaccaaaacaagtaagtttttata-aaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttt 325  Q
    |||||||||||  | |||||||||| ||||||||||  |||| || |||||||  ||| |||||||||||||  | |||| ||||| |||||||| ||||    
T  23453340 gcattggttaagtatccaaaacaagcaagtttttatggaaaaagttgtgtaatctttatttgatcaaaagtaacatcttatattttcaagacaaaatttt 23453439  T
Q  326 tatt 329  Q
    ||||    
T  23453440 tatt 23453443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 41436319 - 41436388
Alignment:
Q  225 aggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 294  Q
    ||||| ||||||| || |||||||||||||||||| || |||| || ||||||| |||| || |||||||    
T  41436319 aggcaatggttaagcatccaaaacaagtaagttttcatgaaaaagttgtgtaatcattattttatcaaaa 41436388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 226 - 329
Target Start/End: Complemental strand, 18135 - 18031
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaag-gtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttt 324  Q
    |||||||||||| |||||||||||||||| ||||||||||||  || ||||||||||||||| |||||||||  ||||||| |||||||||| |||||||    
T  18135 ggcattggttaagcaaccaaaacaagtaactttttataaaaaaagttgtgtaattattacttaatcaaaagtcaaaacttatatttttaagataaatttt 18036  T
Q  325 ttatt 329  Q
     ||||    
T  18035 ctatt 18031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 6e-21; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 225 - 329
Target Start/End: Original strand, 6102823 - 6102926
Alignment:
Q  225 aggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttt 324  Q
    ||||||||||||| ||||||||| |||||| ||||||| ||||| || |||||||||||||| |||||||||  ||||||| ||||| ||||||||||||    
T  6102823 aggcattggttaagcaaccaaaataagtaactttttattaaaag-tattgtaattattacttaatcaaaagtcaaaacttatattttgaagacaaatttt 6102921  T
Q  325 ttatt 329  Q
     ||||    
T  6102922 ctatt 6102926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 28511265 - 28511182
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaag-gtagtgtaattattacttgatcaaaagtataaacttacatttt 311  Q
    ||||||||| ||||||||||| |||||||||||||||||  ||||||||||||||| || |||||||||| |||||||||||||    
T  28511265 attggttaagcaaccaaaacatgtaagtttttataaaaaaagtagtgtaattattaattcatcaaaagtaaaaacttacatttt 28511182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 229 - 329
Target Start/End: Original strand, 16802026 - 16802125
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttat 328  Q
    ||||||||| |||||||||||| ||| ||||||||||||| || |||||||||||||| |||||||||  ||| ||| ||||| |||||||||||| |||    
T  16802026 attggttaagcaaccaaaacaaataactttttataaaaag-taatgtaattattacttaatcaaaagtcaaaatttatattttcaagacaaattttctat 16802124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 225 - 324
Target Start/End: Complemental strand, 30840716 - 30840618
Alignment:
Q  225 aggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttt 324  Q
    |||||||| |||| || |||||||||||||||||| | |||||| | ||||||| ||||||||||||||||||  | |||| ||||| ||||||||||||    
T  30840716 aggcattgattaagcatccaaaacaagtaagttttcaaaaaaagtt-gtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaatttt 30840618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 240 - 329
Target Start/End: Complemental strand, 12036411 - 12036323
Alignment:
Q  240 aaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    |||||||| || ||| ||||||| ||||| || |||||||||||||| |||||||||  ||||||| ||||| |||||||||||| ||||    
T  12036411 aaccaaaataaataactttttattaaaag-taatgtaattattacttaatcaaaagtcaaaacttatattttcaagacaaattttctatt 12036323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 7609657 - 7609590
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 294  Q
    |||||||||||| || |||||| |||||||||||||| |||| ||| ||||||||||||||||| ||||    
T  7609657 ggcattggttaagca-ccaaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaa 7609590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 1447672 - 1447606
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaa 292  Q
    |||||||||||| |||| |||| |||||||||||||   ||| ||||||||||||||||||| ||||    
T  1447672 ggcattggttaagcaacaaaaataagtaagtttttaatgaaaagtagtgtaattattacttggtcaa 1447606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 229 - 329
Target Start/End: Complemental strand, 15139281 - 15139185
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttat 328  Q
    ||||||||| ||| ||||| |||||| |||||||||||| ||||||||   ||||||| ||||||| |  || |||| ||||| ||||||||||||||||    
T  15139281 attggttaagcaatcaaaataagtaattttttataaaaa-gtagtgta---attacttaatcaaaaatcaaatcttatattttcaagacaaattttttat 15139186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 228 - 329
Target Start/End: Original strand, 3600108 - 3600208
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttttta 327  Q
    ||||| |||| ||||||||| ||  || ||||||||||||| || |||||||||||||| || |||| |  ||||||| ||||| ||||||||| |||||    
T  3600108 cattgattaagcaaccaaaataaaaaactttttataaaaag-taatgtaattattacttaattaaaattcaaaacttatattttcaagacaaatatttta 3600206  T
Q  328 tt 329  Q
    ||    
T  3600207 tt 3600208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 14044772 - 14044727
Alignment:
Q  252 taagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    |||||||||||||||| || ||||||| ||||||||||||||||||    
T  14044772 taagtttttataaaaaagttgtgtaataattacttgatcaaaagta 14044727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 329
Target Start/End: Complemental strand, 14152587 - 14152487
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagttttt-ataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttttta 327  Q
    |||||||||  ||||||||||||||| ||||| |||||||| | ||||||||||||||| || |||| | |||||||  | |||||||| ||||||| ||    
T  14152587 attggttaagtaaccaaaacaagtaacttttttataaaaag-tggtgtaattattacttcataaaaaatctaaacttttaattttaagataaattttcta 14152489  T
Q  328 tt 329  Q
    ||    
T  14152488 tt 14152487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 22293982 - 22294047
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 294  Q
    ||||||||||||  |||||||||||||||||||| |||| || ||| ||| |||| ||||||||||    
T  22293982 attggttaaacattcaaaacaagtaagtttttatgaaaaagttgtgcaataattatttgatcaaaa 22294047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 14863334 - 14863401
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 296  Q
    |||||||||| || |||||| |||||||||||||| ||||  || ||||||||||||||||| ||||||    
T  14863334 cattggttaagca-ccaaaaaaagtaagtttttattaaaaattaatgtaattattacttgataaaaagt 14863401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 226 - 317
Target Start/End: Complemental strand, 39034569 - 39034478
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttata-aaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagac 317  Q
    |||||||||| | |||||||||||| ||| ||||| || ||||  ||||||||||||||||| |||||||||  ||||||| ||||| |||||    
T  39034569 ggcattggtttagcaaccaaaacaa-taattttttttataaaatatagtgtaattattacttaatcaaaagtcaaaacttatattttcaagac 39034478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 2835701 - 2835650
Alignment:
Q  263 aaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaa 314  Q
    ||||||||| ||||| |||||||| |||||||||| ||| ||||||||||||    
T  2835701 aaaaaggtaatgtaaatattactttatcaaaagtaaaaatttacatttttaa 2835650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 6830262 - 6830320
Alignment:
Q  225 aggcattggttaaacaaccaaaacaagtaa-gtttttataaaaaggtagtgtaattatta 283  Q
    ||||||||||||| ||||||||||||||||  ||||||| |||| |||||||||||||||    
T  6830262 aggcattggttaagcaaccaaaacaagtaatttttttattaaaa-gtagtgtaattatta 6830320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 326
Target Start/End: Original strand, 7224035 - 7224133
Alignment:
Q  227 gcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttttt 326  Q
    ||||| ||||| ||||||||| | | |||||||||||||| | ||||||||||||  ||| || ||||||| ||||||||||| | || |||| ||||||    
T  7224035 gcattagttaagcaaccaaaatatgcaagtttttataaaa-gatagtgtaattatcgcttcattaaaagtaaaaacttacattctcaacacaattttttt 7224133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 2611266 - 2611197
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 296  Q
    |||||||||||| || |||||  |||||||||||||| |||| ||| |||||||||||||| || ||||||    
T  2611266 ggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 2611197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 296
Target Start/End: Original strand, 11320094 - 11320190
Alignment:
Q  198 taaggagaatattagccaatatcgttgaggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 296  Q
    |||||||||| ||| ||| | || ||||| |||||||||| || |||||| |||| | ||||||| |||| ||| ||||||||||||||||| ||||||    
T  11320094 taaggagaatgttaaccagtgtcattgagacattggttaagca-ccaaaa-aagttaatttttattaaaaagtaatgtaattattacttgataaaaagt 11320190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 8435049 - 8435122
Alignment:
Q  223 tgaggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 296  Q
    ||||||||||||||| || |||||| ||||||| |||||| ||||  | || ||||||||| ||| ||||||||    
T  8435049 tgaggcattggttaagcatccaaaataagtaagattttattaaaaaatggtataattattagttggtcaaaagt 8435122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 11815924 - 11816009
Alignment:
Q  244 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    ||||||||||||||||||| ||||    ||||||| ||||||| ||||||||||  | |||| ||||| |||||||| ||| ||||    
T  11815924 aaaacaagtaagtttttatgaaaaatatgtgtaatcattactttatcaaaagtaacatcttatattttcaagacaaaatttctatt 11816009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 34236175 - 34236278
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttata-aaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttt 324  Q
    ||||||||||||||||||||||||||||| ||||| || ||||  |||||||||||| |||| ||||||||| |||||||| ||||| | ||||||||||    
T  34236175 ggcattggttaaacaaccaaaacaagtaattttttttataaaaaatagtgtaattatcacttaatcaaaagt-taaacttatattttcaggacaaatttt 34236273  T
Q  325 ttatt 329  Q
    |||||    
T  34236274 ttatt 34236278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 226 - 304
Target Start/End: Original strand, 48202480 - 48202558
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaactt 304  Q
    |||||||||||| ||| ||||||| |||||||||||||| ||||||||||||||||||||| |||||||| | ||||||    
T  48202480 ggcattggttaagcaaacaaaacaggtaagtttttataagaaggtagtgtaattattacttcatcaaaagcaaaaactt 48202558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 225 - 329
Target Start/End: Complemental strand, 16831219 - 16831116
Alignment:
Q  225 aggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttt 324  Q
    |||||||| |||| |||||||||||| ||| ||||||||||||| |||| |||||||||||| |||||||||  ||| ||| |||||||| |||||||||    
T  16831219 aggcattgattaagcaaccaaaacaaataactttttataaaaag-tagtataattattacttaatcaaaagtcaaaatttatatttttaaaacaaatttt 16831121  T
Q  325 ttatt 329  Q
     ||||    
T  16831120 atatt 16831116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 229 - 325
Target Start/End: Original strand, 55090779 - 55090874
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttt 325  Q
    ||||||||| |||| ||||||||||| ||||||||||||| | |||||||||| |||| |||||||||  ||||||| ||||| |||||||||||||    
T  55090779 attggttaagcaactaaaacaagtaactttttataaaaagtt-gtgtaattataacttaatcaaaagtcaaaacttatattttcaagacaaattttt 55090874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 227 - 329
Target Start/End: Original strand, 53142777 - 53142879
Alignment:
Q  227 gcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttttt 326  Q
    ||||||||||| ||||| |||||| ||| ||||||||||||  |  |||||||||||||| |||||||||  ||||||| ||||| | ||||||||||||    
T  53142777 gcattggttaagcaaccgaaacaaataactttttataaaaaaatgatgtaattattacttaatcaaaagttaaaacttatattttcatgacaaatttttt 53142876  T
Q  327 att 329  Q
    |||    
T  53142877 att 53142879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 228 - 329
Target Start/End: Original strand, 20775069 - 20775170
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttttta 327  Q
    |||||||||| || ||||||||||||||||||||| |||| ||  |||||| |||| |||||||||| ||  | |||| |||| ||||||||||||||||    
T  20775069 cattggttaagcatccaaaacaagtaagtttttatgaaaaagttatgtaataattatttgatcaaaaataatatcttatatttctaagacaaatttttta 20775168  T
Q  328 tt 329  Q
    ||    
T  20775169 tt 20775170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 229 - 314
Target Start/End: Complemental strand, 44740963 - 44740877
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaatt-attacttgatcaaaagtataaacttacatttttaa 314  Q
    ||||||||||||||||||| |||||| ||||||||||||  || | ||||| ||||||| ||||||| || ||||||||||||||||    
T  44740963 attggttaaacaaccaaaataagtaaatttttataaaaaaataatttaattaattacttcatcaaaattaaaaacttacatttttaa 44740877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 228 - 329
Target Start/End: Complemental strand, 51100143 - 51100041
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagttttt-ataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttttt 326  Q
    |||| ||||||||| |||||||||||| ||||| || |||| |||||||||||||||||| |||||||||  ||||||| ||||| || | ||||||| |    
T  51100143 catttgttaaacaatcaaaacaagtaacttttttattaaaaagtagtgtaattattacttaatcaaaagttaaaacttatattttcaaaataaattttct 51100044  T
Q  327 att 329  Q
    |||    
T  51100043 att 51100041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 27284067 - 27284138
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    ||||||||||||||| |||||| || |||||||||||||||| || ||| ||| |||| |||||||||||||    
T  27284067 ggcattggttaaacatccaaaataaataagtttttataaaaaagttgtgcaatcattatttgatcaaaagta 27284138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 2565510 - 2565458
Alignment:
Q  245 aaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    ||||||||||||||||||| ||| || ||||||| ||||||||||||||||||    
T  2565510 aaacaagtaagtttttatagaaaagttgtgtaatcattacttgatcaaaagta 2565458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 329
Target Start/End: Complemental strand, 50101395 - 50101295
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttat 328  Q
    |||| |||||||| |||||||| ||| ||||||||||||  |  | |||||| || || ||||||| |  ||||||| ||||||||||||||||||||||    
T  50101395 attgattaaacaatcaaaacaaataattttttataaaaaaatgatataattaatatttaatcaaaaatcaaaacttatatttttaagacaaattttttat 50101296  T
Q  329 t 329  Q
    |    
T  50101295 t 50101295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 2824934 - 2824863
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    ||||||| |||| || | |||||||| |||||||||| |||| || ||||||| ||||||||||||||||||    
T  2824934 ggcattgattaagcatctaaaacaagcaagtttttatgaaaatgttgtgtaatcattacttgatcaaaagta 2824863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 226 - 329
Target Start/End: Complemental strand, 2908328 - 2908226
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttt 325  Q
    |||||||||||| ||||||||| |||| | |||||||| ||| || |||||||||||||||  |||||| |  ||| ||| ||||| ||||||||||||     
T  2908328 ggcattggttaagcaaccaaaataagtgactttttatagaaa-gtggtgtaattattacttactcaaaaatcaaaatttatattttcaagacaaattttc 2908230  T
Q  326 tatt 329  Q
    ||||    
T  2908229 tatt 2908226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 12094961 - 12095024
Alignment:
Q  234 ttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    ||||||| |||||| |||||||||||||| |||| || ||||||| ||||||| ||||||||||    
T  12094961 ttaaacatccaaaataagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagta 12095024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 52837385 - 52837314
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    |||||||||||| || |||||||||| || ||||||| |||| || ||||||| ||||| ||||||||||||    
T  52837385 ggcattggttaagcatccaaaacaagaaaatttttatgaaaaagttgtgtaataattacgtgatcaaaagta 52837314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 244 - 329
Target Start/End: Complemental strand, 5645747 - 5645662
Alignment:
Q  244 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacattttt-aagacaaattttttatt 329  Q
    ||||||| ||| ||||||||||||| |||||||||||||| || |||||||||  |||||||  ||||| |||||||||||| ||||    
T  5645747 aaaacaaataactttttataaaaag-tagtgtaattattatttaatcaaaagtcaaaacttaattttttcaagacaaattttctatt 5645662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 232 - 329
Target Start/End: Original strand, 9119242 - 9119339
Alignment:
Q  232 ggttaaacaaccaaaacaagtaagttttt-ataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    |||||| |||||||||||||||| ||||| || ||||| |||||||||| |||||| |||||||||  ||||||| ||||| |  ||||||||| ||||    
T  9119242 ggttaagcaaccaaaacaagtaatttttttattaaaag-tagtgtaattgttacttaatcaaaagtcaaaacttatattttcaccacaaattttctatt 9119339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 19480550 - 19480603
Alignment:
Q  244 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    ||||||||||||||||||| |||| || ||||||| ||||||| ||||||||||    
T  19480550 aaaacaagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagta 19480603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 32325053 - 32325121
Alignment:
Q  259 ttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttat 328  Q
    |||||||||| | ||||||||||||||| |||||||||  ||| ||| ||||| ||||||||||||||||    
T  32325053 ttataaaaag-tggtgtaattattacttaatcaaaagtcaaaaattatattttcaagacaaattttttat 32325121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 226 - 331
Target Start/End: Complemental strand, 41142412 - 41142307
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttt 325  Q
    |||| ||||||| ||  |||||||||||| |||| | ||||| ||| ||||||||||| || ||||||||||  | ||||  |||| |||||||| ||||    
T  41142412 ggcaatggttaagcattcaaaacaagtaaattttcacaaaaaagtaatgtaattattatttaatcaaaagtaagaccttattttttcaagacaaaatttt 41142313  T
Q  326 tattca 331  Q
    ||||||    
T  41142312 tattca 41142307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 240 - 324
Target Start/End: Original strand, 19248898 - 19248981
Alignment:
Q  240 aaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttt 324  Q
    ||||||||||| ||| |||||||||||||  | |||||| ||||||| || |||| |  ||||||| ||||||||||||||||||    
T  19248898 aaccaaaacaactaattttttataaaaagtga-tgtaatcattacttaattaaaaatcaaaacttatatttttaagacaaatttt 19248981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 224 - 296
Target Start/End: Original strand, 31647715 - 31647786
Alignment:
Q  224 gaggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 296  Q
    |||| ||||||||| || |||||| || ||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  31647715 gaggtattggttaagca-ccaaaagaaataagtttttattaaaaagtaatgtaattattacttgataaaaagt 31647786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 329
Target Start/End: Original strand, 4860137 - 4860215
Alignment:
Q  250 agtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    ||||| |||||||||||| | | |||||||||||||| |||||||||  ||||||| ||||| || ||||||||| ||||    
T  4860137 agtaattttttataaaaaagga-tgtaattattacttaatcaaaagtcaaaacttatattttcaaaacaaattttctatt 4860215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 267
Target Start/End: Original strand, 18744893 - 18744932
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaa 267  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  18744893 cattggttaaacatccaaaacaagcaagtttttataaaaa 18744932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 35808621 - 35808568
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattatt 282  Q
    |||||||||| ||||||||| |||||| |||||||||||| || |||||||||||    
T  35808621 cattggttaagcaaccaaaataagtaactttttataaaaa-gttgtgtaattatt 35808568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 325
Target Start/End: Complemental strand, 14347209 - 14347141
Alignment:
Q  256 tttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttt 325  Q
    ||||||||||||  |||| |||||||||||| ||||||| |  ||||||| |||||||||| ||||||||    
T  14347209 tttttataaaaaa-tagtataattattacttaatcaaaaatcaaaacttatatttttaagataaattttt 14347141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 30694284 - 30694349
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 294  Q
    ||||||||  ||||||||||||||||||||| | ||||  |  || ||||||||||||||||||||    
T  30694284 attggttatgcaaccaaaacaagtaagttttcacaaaacagaggtataattattacttgatcaaaa 30694349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 45921411 - 45921354
Alignment:
Q  272 gtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    ||||||||||||||| ||||| |||  ||||||| ||||| |||||||||||| ||||    
T  45921411 gtgtaattattacttaatcaatagtcaaaacttatattttcaagacaaattttctatt 45921354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 6e-21; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 27513 - 27596
Alignment:
Q  245 aaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    |||||||||| ||||||||||||| ||||||||||||||||| |||||||||  ||||||| ||||| |||||||||||||||||    
T  27513 aaacaagtaactttttataaaaag-tagtgtaattattacttaatcaaaagtcaaaacttatattttaaagacaaattttttatt 27596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 226 - 320
Target Start/End: Complemental strand, 33148249 - 33148155
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 320  Q
    |||||| ||||||||  |||||||||||||||||||| ||||  | ||||||| ||||||||||||||||||  | |||| ||||||||||||||    
T  33148249 ggcatttgttaaacattcaaaacaagtaagtttttatgaaaaaattgtgtaatcattacttgatcaaaagtagcatcttatatttttaagacaaa 33148155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 244 - 338
Target Start/End: Original strand, 39238844 - 39238938
Alignment:
Q  244 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttattcaaggattc 338  Q
    ||||||||||||||||||  ||||  ||||||||| |||||||||||||| |||  ||||||||||||||||| ||| |||||||| | ||||||    
T  39238844 aaaacaagtaagtttttaataaaaaatagtgtaatcattacttgatcaaatgtaacaacttacatttttaagagaaaatttttatttatggattc 39238938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 228 - 329
Target Start/End: Complemental strand, 34382748 - 34382648
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttttta 327  Q
    |||||||| ||||| |||||||||||| |||||||||||| || |||||||||||  || ||||||| |  ||||||| |||||||||| ||||||||||    
T  34382748 cattggtttaacaatcaaaacaagtaactttttataaaaa-gttgtgtaattattgtttaatcaaaaattaaaacttatatttttaagataaatttttta 34382650  T
Q  328 tt 329  Q
    ||    
T  34382649 tt 34382648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 249 - 329
Target Start/End: Original strand, 35876767 - 35876847
Alignment:
Q  249 aagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    |||||| ||||||||||||  |||||| ||| || ||| |||||||||  ||||||| |||||||||||||||||||||||    
T  35876767 aagtaactttttataaaaaaatagtgttattgttccttaatcaaaagttaaaacttatatttttaagacaaattttttatt 35876847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 228 - 320
Target Start/End: Complemental strand, 49731278 - 49731186
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 320  Q
    ||||||||||||||| ||||||||||||||||||  |||| ||||| ||||||||| ||| ||||| |||  | ||||||| || ||||||||    
T  49731278 cattggttaaacaactaaaacaagtaagtttttaataaaaagtagtataattattatttggtcaaatgtaacatcttacatcttcaagacaaa 49731186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 35873495 - 35873561
Alignment:
Q  275 taattattacttgatcaaaagtataaacttacatttttaagacaaattttttattcaaggattcttt 341  Q
    |||||||||||| || ||||||| ||| ||||||||| ||||||||||||||||| || ||||||||    
T  35873495 taattattacttcatgaaaagtaaaaatttacattttgaagacaaattttttatttaaagattcttt 35873561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 11449073 - 11449158
Alignment:
Q  244 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    |||| |||||||||||||| |||| ||  |||||||||||| ||||||||| ||  |  ||| |||||||||||||||||||||||    
T  11449073 aaaataagtaagtttttatgaaaaagttatgtaattattacatgatcaaaattaacatattatatttttaagacaaattttttatt 11449158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 13969214 - 13969146
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    ||||||||| |||||||||||||||||||||||| ||||  | ||||||| ||||||| || |||||||    
T  13969214 attggttaagcaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaattaaaagta 13969146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 31884579 - 31884510
Alignment:
Q  224 gaggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 294  Q
    |||||||||||||| || |||||| |||||||||||||| |||| ||| ||||||||||| ||||| ||||    
T  31884579 gaggcattggttaagca-ccaaaaaaagtaagtttttattaaaaagtaatgtaattattatttgataaaaa 31884510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 234 - 361
Target Start/End: Original strand, 33148902 - 33149027
Alignment:
Q  234 ttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttattcaag 333  Q
    |||| |||| |||| |||||||||||||  |||| |||||||||||||||||||||    ||||  ||||||| |||| |||||||||||| || | | |    
T  33148902 ttaagcaactaaaataagtaagtttttaataaaaagtagtgtaattattacttgat---tagtaacaacttactttttcaagacaaattttctacttatg 33148998  T
Q  334 gattcttttaact-agtagcaagaccctt 361  Q
    |||||||| | || | |||||||||||||    
T  33148999 gattctttaacctgattagcaagaccctt 33149027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 38597475 - 38597545
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 296  Q
    ||||||||||||  | |||||||||||||||||| ||||||| || || |||| ||||||| |||||||||    
T  38597475 ggcattggttaagtatccaaaacaagtaagttttaataaaaaagttgtctaatcattacttaatcaaaagt 38597545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 31160752 - 31160824
Alignment:
Q  256 tttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    |||||||||||||  | |||||||||||||| |||||||||  ||| ||| |||||||||||||||||| ||||    
T  31160752 tttttataaaaagtga-tgtaattattacttaatcaaaagtcaaaatttatatttttaagacaaattttctatt 31160824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 26890183 - 26890115
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    |||||||||  ||||||||||||||||||||||||||   |||||||||||| || ||  |||||||||    
T  26890183 attggttaagtaaccaaaacaagtaagtttttataaatgagtagtgtaattaatagttagtcaaaagta 26890115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 28490736 - 28490669
Alignment:
Q  256 tttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttt 324  Q
    ||||||||||||| | ||||||||||||||| | ||||| |  ||||||| ||||||||||||||||||    
T  28490736 tttttataaaaagtt-gtgtaattattacttaagcaaaaatcaaaacttatatttttaagacaaatttt 28490669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 40391337 - 40391266
Alignment:
Q  224 gaggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 296  Q
    |||||||||||||| || |||||  |||| ||||||||| |||| ||| ||||||||||||||||| ||||||    
T  40391337 gaggcattggttaagca-ccaaatgaagtgagtttttatcaaaaagtaatgtaattattacttgataaaaagt 40391266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 46295982 - 46295918
Alignment:
Q  233 gttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    ||||| || ||||||||| ||||||||||| |||| || |||| || ||||||||||||||||||    
T  46295982 gttaagcatccaaaacaaataagtttttatgaaaaagttgtgtcatgattacttgatcaaaagta 46295918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 17644905 - 17644838
Alignment:
Q  192 ttaaattaaggagaatattagccaatatcgttgaggcattggttaaacaaccaaaacaagtaagtttt 259  Q
    ||||||||||||||||  || ||||| || ||| |||| ||||||| || ||||||||||||||||||    
T  17644905 ttaaattaaggagaatgctaaccaatgtccttggggcaatggttaagcatccaaaacaagtaagtttt 17644838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 36160564 - 36160623
Alignment:
Q  227 gcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattactt 286  Q
    ||||||||||| |||  |||||||||||||| |||  |||| ||||||||||||||||||    
T  36160564 gcattggttaagcaattaaaacaagtaagttcttaataaaaagtagtgtaattattactt 36160623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 259
Target Start/End: Original strand, 5069698 - 5069731
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttt 259  Q
    ||||||||||||||| ||||||||||||||||||    
T  5069698 ggcattggttaaacatccaaaacaagtaagtttt 5069731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 27742549 - 27742617
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaag 295  Q
    |||||||||||| |||| |||| |||||| ||||||| |||| ||| |||||||||||||| || |||||    
T  27742549 ggcattggttaagcaac-aaaagaagtaattttttattaaaaagtaatgtaattattacttaataaaaag 27742617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 48887787 - 48887824
Alignment:
Q  224 gaggcattggttaaacaaccaaaacaagtaagttttta 261  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  48887787 gaggcattggttaagcaactaaaacaagtaagttttta 48887824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 50127451 - 50127398
Alignment:
Q  241 accaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 294  Q
    ||||||| |||||||||||||| |||| ||| ||||||||||||| ||| ||||    
T  50127451 accaaaagaagtaagtttttattaaaaagtaatgtaattattactcgataaaaa 50127398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 9e-20; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 227 - 329
Target Start/End: Original strand, 18131188 - 18131289
Alignment:
Q  227 gcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttttt 326  Q
    ||||||||||| |||||||||||||||| ||||||| |||| |||||||||||||||||| ||||  |||  ||||||| ||||| |||||||||||| |    
T  18131188 gcattggttaagcaaccaaaacaagtaactttttattaaaa-gtagtgtaattattacttaatcagtagtcaaaacttatattttcaagacaaattttct 18131286  T
Q  327 att 329  Q
    |||    
T  18131287 att 18131289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 30924284 - 30924208
Alignment:
Q  225 aggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaac 302  Q
    |||||||||| |||||||||||| |||||| ||||||||||||  ||||||||||||||||| |||||||||| ||||    
T  30924284 aggcattggtcaaacaaccaaaataagtaaatttttataaaaa-atagtgtaattattacttaatcaaaagtaaaaac 30924208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 228 - 329
Target Start/End: Original strand, 3137397 - 3137498
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttttta 327  Q
    |||||||||  || ||||||||| ||||||| ||| |||| || ||||||| ||||||||||||||||||  | |||||||||| |||||||| ||| ||    
T  3137397 cattggttaggcatccaaaacaaataagtttatatgaaaaagttgtgtaataattacttgatcaaaagtaacatcttacattttcaagacaaaatttcta 3137496  T
Q  328 tt 329  Q
    ||    
T  3137497 tt 3137498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 229 - 329
Target Start/End: Original strand, 32881111 - 32881211
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttat 328  Q
    |||||||||||| |||||| |||||||||||||  |||| || ||||||| || ||||||| |||| ||  | |||| |||||||||||||| |||||||    
T  32881111 attggttaaacatccaaaataagtaagtttttaataaaatgttgtgtaatcataacttgataaaaaataatatcttatatttttaagacaaaatttttat 32881210  T
Q  329 t 329  Q
    |    
T  32881211 t 32881211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 33621367 - 33621464
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttt 325  Q
    ||||||||||||||| ||||||||||||| |||| ||||||      |||||| |||||||||||||||||| ||  ||| |||||||||||||| ||||    
T  33621367 ggcattggttaaacatccaaaacaagtaaatttt-ataaaat-----tgtaataattacttgatcaaaagtaaaattttatatttttaagacaaaatttt 33621460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 10451893 - 10451997
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagttttt-ataaaaaggtagtgtaa-ttattacttgatcaaaagtataaacttacatttttaagacaaattt 323  Q
    |||||||||||| |||| ||||||||||| ||||| |||||||  | |||||| ||||||||| |||||||||  ||||||| |||||||| ||||| ||    
T  10451893 ggcattggttaagcaactaaaacaagtaatttttttataaaaaa-tggtgtaaattattacttaatcaaaagtcaaaacttatatttttaatacaaaatt 10451991  T
Q  324 tttatt 329  Q
    ||||||    
T  10451992 tttatt 10451997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 40607324 - 40607396
Alignment:
Q  256 tttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    ||||||| ||||| ||||||||||||||||| |||||||||  ||||||| |||||||||| ||||||| ||||    
T  40607324 tttttattaaaag-tagtgtaattattacttaatcaaaagtcaaaacttatatttttaagataaattttctatt 40607396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 225 - 329
Target Start/End: Complemental strand, 34678325 - 34678222
Alignment:
Q  225 aggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttt 324  Q
    ||||| ||||||| ||  ||||||||| || |||| |||||||  || |||||||||||||||||||||||||  |  ||||||||| ||||||||||||    
T  34678325 aggcaatggttaagcattcaaaacaagcaacttttaataaaaaatta-tgtaattattacttgatcaaaagtaacattttacattttcaagacaaatttt 34678227  T
Q  325 ttatt 329  Q
     ||||    
T  34678226 ctatt 34678222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 43917585 - 43917653
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    ||||||||| || ||||||||||||| ||||||||||||  | |||||||||||| ||||| |||||||    
T  43917585 attggttaagcatccaaaacaagtaaatttttataaaaaaattgtgtaattattatttgattaaaagta 43917653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 44655350 - 44655286
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaa 292  Q
    ||||| |||||||||||||| || ||||||||||  |||| ||||||||||||||||||| ||||    
T  44655350 cattgattaaacaaccaaaataaataagtttttaataaaaagtagtgtaattattacttggtcaa 44655286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 250 - 329
Target Start/End: Original strand, 4989715 - 4989793
Alignment:
Q  250 agtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    ||||| ||||||||||||  || ||||||| |||||||||||||| |  ||||||| ||||| |||||||||||||||||    
T  4989715 agtaactttttataaaaaatta-tgtaattgttacttgatcaaaaatcaaaacttatattttcaagacaaattttttatt 4989793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 18117406 - 18117473
Alignment:
Q  99 atgctcaccatatcgaattgaattgtcatttcaagacatgaaattgaggtggatcaaatacgttgtga 166  Q
    |||||||||||||| |||||||||||||||| | ||||| ||||| || ||||||||| || ||||||    
T  18117406 atgctcaccatatctaattgaattgtcattttaggacatcaaattaagatggatcaaagaccttgtga 18117473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 10029159 - 10029228
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    |||||||||| || ||||| ||||||| ||||||| |||| || || |||| ||||||||||||||||||    
T  10029159 cattggttaagcatccaaatcaagtaaatttttatgaaaaagttgtataatcattacttgatcaaaagta 10029228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 233 - 329
Target Start/End: Complemental strand, 18200792 - 18200696
Alignment:
Q  233 gttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    ||||| || |||||| ||||||| |||||| ||||  | ||||||| ||||||| ||||||||||  |  ||| |||||||||||||| ||||||||    
T  18200792 gttaagcatccaaaataagtaagcttttatgaaaaaattgtgtaatcattacttaatcaaaagtaacatgttatatttttaagacaaaatttttatt 18200696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 229 - 329
Target Start/End: Complemental strand, 35901531 - 35901431
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttat 328  Q
    ||||||||| || ||||||||||||||||||||| |||| || ||| ||| |||| || || |||||||  | |||||||||| || ||||| ||| |||    
T  35901531 attggttaagcatccaaaacaagtaagtttttatgaaaaagttgtgcaatcattatttaattaaaagtaacatcttacattttcaaaacaaaatttctat 35901432  T
Q  329 t 329  Q
    |    
T  35901431 t 35901431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 11150918 - 11151020
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttt 325  Q
    |||||||||||| ||  ||||| ||||||||||||| |||||  | ||||||| |||| |||||||||||||  | |||| |||| |||||||||  |||    
T  11150918 ggcattggttaagcattcaaaataagtaagttttta-aaaaaaattgtgtaatcattatttgatcaaaagtaacatcttatatttctaagacaaaaattt 11151016  T
Q  326 tatt 329  Q
    ||||    
T  11151017 tatt 11151020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 6270249 - 6270199
Alignment:
Q  244 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 294  Q
    |||||||||||||||| ||||||| || ||||||| ||||||| |||||||    
T  6270249 aaaacaagtaagttttcataaaaaagttgtgtaatcattactttatcaaaa 6270199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 20821908 - 20821978
Alignment:
Q  249 aagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaa 319  Q
    |||||||||||||| |||| ||| |||||||||||||| || ||||||   || ||| |||||||||||||    
T  20821908 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacaatttatatttttaagacaa 20821978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 223 - 320
Target Start/End: Complemental strand, 37530078 - 37529978
Alignment:
Q  223 tgaggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtata---aacttacatttttaagacaa 319  Q
    |||| |||||||||||||| ||||| ||  |||||||||| |||| || || ||||||| || | |||||||||| |   |||||| |||||||||||||    
T  37530078 tgagtcattggttaaacaatcaaaagaaacaagtttttattaaaaagttgtttaattataacataatcaaaagtagatacaacttatatttttaagacaa 37529979  T
Q  320 a 320  Q
    |    
T  37529978 a 37529978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 27162832 - 27162881
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaa 277  Q
    |||||||||| || |||||||||| ||||||||||||||| || ||||||    
T  27162832 cattggttaagcatccaaaacaagcaagtttttataaaaaagttgtgtaa 27162881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 10008190 - 10008259
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    |||||||||| ||||||||| |||||||||||||| |||| || ||||||||||||||||||||||||||    
T  10008190 cattggttaagcaaccaaaagaagtaagtttttattaaaaagtggtgtaattattacttgatcaaaagta 10008259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 27082308 - 27082377
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    ||||||||||||||||||||||||||| |||| || |||| || ||||||| |||| |||||||||||||    
T  27082308 cattggttaaacaaccaaaacaagtaaattttcatgaaaaagttgtgtaatgattatttgatcaaaagta 27082377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 228 - 320
Target Start/End: Complemental strand, 2911583 - 2911491
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 320  Q
    |||||||||| |||  ||||||| |||||||||| ||||| ||||| |||| |||||||||||||| |||  | |||||||||| ||||||||    
T  2911583 cattggttaagcaattaaaacaaataagtttttaaaaaaaagtagtataatcattacttgatcaaatgtaacatcttacattttcaagacaaa 2911491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 329
Target Start/End: Complemental strand, 5611276 - 5611144
Alignment:
Q  197 ttaaggagaatattagccaatatcgttgaggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 296  Q
    |||||||||||  || ||| |||| |  ||| |||||||||||| ||||||||||||||||||||| || | || || ||||||||| ||||| ||||||    
T  5611276 ttaaggagaatgctaaccagtatcataaaggtattggttaaacatccaaaacaagtaagtttttatgaataagttgtataattattatttgattaaaagt 5611177  T
Q  297 ataaacttacatttttaagacaaattttttatt 329  Q
    |  | |||| |||| ||||||||| ||| ||||    
T  5611176 aacatcttatatttctaagacaaaatttctatt 5611144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 228 - 329
Target Start/End: Complemental strand, 9213160 - 9213059
Alignment:
Q  228 cattggttaaacaaccaaaacaag---taagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttt 324  Q
    ||||||||||  ||||||||||||   ||| ||||||||||||| ||||||||||||||||||||||||| |  |||| || ||||| ||||||||||||    
T  9213160 cattggttaagaaaccaaaacaagcagtaactttttataaaaag-tagtgtaattattacttgatcaaaaat-caaacata-attttcaagacaaatttt 9213064  T
Q  325 ttatt 329  Q
    |||||    
T  9213063 ttatt 9213059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 6770828 - 6770932
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttat-aaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttt 324  Q
    |||||||||||| |||||||||||||| | ||||||| ||||| ||  ||||||||||| || |||||||||  ||| ||| ||||| |||| |||||||    
T  6770828 ggcattggttaagcaaccaaaacaagtcactttttataaaaaaagttatgtaattattatttaatcaaaagtcaaaatttatattttcaagataaatttt 6770927  T
Q  325 ttatt 329  Q
     ||||    
T  6770928 ctatt 6770932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 18493241 - 18493309
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    |||||||||| |  |||| |||||||||||||||||||| ||  |||||| ||||||||||||||||||    
T  18493241 attggttaaatattcaaatcaagtaagtttttataaaaaagttttgtaataattacttgatcaaaagta 18493309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 32800199 - 32800303
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaagg-tagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttt 324  Q
    |||||| ||||| |||||||||  ||||| ||||||||||||   | |||||||||||| || ||||||| |  ||||||| ||||||||||||||||||    
T  32800199 ggcatttgttaagcaaccaaaagtagtaattttttataaaaaaaatggtgtaattattatttaatcaaaaatcaaaacttatatttttaagacaaatttt 32800298  T
Q  325 ttatt 329  Q
     ||||    
T  32800299 ctatt 32800303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 250 - 329
Target Start/End: Complemental strand, 2613448 - 2613367
Alignment:
Q  250 agtaagttttta--taaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    ||||||||||||  |||||| ||  || ||||||||||||||||||||||  |||||| |||||||||||||| ||| ||||    
T  2613448 agtaagtttttacataaaaatgtgatgaaattattacttgatcaaaagtagcaacttatatttttaagacaaaatttctatt 2613367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 256 - 329
Target Start/End: Complemental strand, 28048828 - 28048756
Alignment:
Q  256 tttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    ||||||||||||| | ||||||||||||||| || ||||||  ||||||| |||||||| ||||||||| ||||    
T  28048828 tttttataaaaag-tggtgtaattattacttaattaaaagtcaaaacttatatttttaaaacaaattttctatt 28048756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 31223190 - 31223251
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttat-aaaaaggtagtgtaattattactt 286  Q
    ||||||||||||||| |||||||||||||||||| || ||||| || ||||||| |||||||    
T  31223190 ggcattggttaaacatccaaaacaagtaagttttcatgaaaaaagttgtgtaatcattactt 31223251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 12677822 - 12677882
Alignment:
Q  233 gttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaa 293  Q
    ||||| |||| ||||||||||||||||||  |||| |||||||||| |||||||| |||||    
T  12677822 gttaagcaactaaaacaagtaagtttttaataaaaagtagtgtaatcattacttggtcaaa 12677882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 17835095 - 17835023
Alignment:
Q  225 aggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    ||||||||||||||||  ||||||||| ||||||| || ||||  | || |||||||||||| ||||||||||    
T  17835095 aggcattggttaaacattcaaaacaagcaagttttcatgaaaaaatcgtataattattacttaatcaaaagta 17835023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 19659725 - 19659665
Alignment:
Q  233 gttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaa 293  Q
    |||||||| | |||| ||||||||||||||||||| || ||||||| |||| |||||||||    
T  19659725 gttaaacatctaaaataagtaagtttttataaaaaagttgtgtaatcattagttgatcaaa 19659665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 30396498 - 30396454
Alignment:
Q  225 aggcattggttaaacaaccaaaacaagtaagtttttataaaaagg 269  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||    
T  30396498 aggcattggttaaacaactaaaacaaataagtttttgtaaaaagg 30396454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 260
Target Start/End: Complemental strand, 20208228 - 20208193
Alignment:
Q  225 aggcattggttaaacaaccaaaacaagtaagttttt 260  Q
    |||||||||||||||||||||||||||||| |||||    
T  20208228 aggcattggttaaacaaccaaaacaagtaacttttt 20208193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 260
Target Start/End: Complemental strand, 22102251 - 22102216
Alignment:
Q  225 aggcattggttaaacaaccaaaacaagtaagttttt 260  Q
    |||||||||||||||||||||||||||||| |||||    
T  22102251 aggcattggttaaacaaccaaaacaagtaacttttt 22102216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 243 - 329
Target Start/End: Complemental strand, 20208113 - 20208028
Alignment:
Q  243 caaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    |||||||||||  ||||||| ||||| || |||||||||||||| |||||||||  | ||||| ||||| || ||||||||| ||||    
T  20208113 caaaacaagtagctttttattaaaag-taatgtaattattacttaatcaaaagtcaatacttatattttcaaaacaaattttatatt 20208028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 243 - 329
Target Start/End: Complemental strand, 22102136 - 22102051
Alignment:
Q  243 caaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    |||||||||||  ||||||| ||||| || |||||||||||||| |||||||||  | ||||| ||||| || ||||||||| ||||    
T  22102136 caaaacaagtagctttttattaaaag-taatgtaattattacttaatcaaaagtcaatacttatattttcaaaacaaattttatatt 22102051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 226 - 338
Target Start/End: Complemental strand, 47445474 - 47445362
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttt 325  Q
    |||||||||||| | |||| |||| |||||||||||||||||  |||| |||||||||||| |||||||||| ||||||| ||||| ||  |||| |||     
T  47445474 ggcattggttaagcgaccagaacatgtaagtttttataaaaaaatagtttaattattacttcatcaaaagtaaaaacttatattttcaaagcaaaatttc 47445375  T
Q  326 tattcaaggattc 338  Q
    |||| ||||||||    
T  47445374 tatttaaggattc 47445362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 228 - 329
Target Start/End: Original strand, 8656291 - 8656393
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttt-tataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttttt 326  Q
    |||||||||| |||||||||||||| | |||| |||||||| || || |||||||||||| |||||||||  |||||||  ||||||||||||||||| |    
T  8656291 cattggttaagcaaccaaaacaagtgacttttttataaaaaagtggtataattattacttaatcaaaagttaaaacttatttttttaagacaaattttct 8656390  T
Q  327 att 329  Q
    |||    
T  8656391 att 8656393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 226 - 320
Target Start/End: Original strand, 16979937 - 16980031
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 320  Q
    |||||||||||| || ||||||||||||| ||||||| |||| || |||| ||||||||| |||||||||||  | |||| ||||| ||||||||    
T  16979937 ggcattggttaagcatccaaaacaagtaaatttttatgaaaaagttgtgtgattattactcgatcaaaagtaacatcttatattttcaagacaaa 16980031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 37928297 - 37928363
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 294  Q
    ||||||||||||| |||||| ||||||||||||||||||| || ||||||| ||||||| |||||||    
T  37928297 cattggttaaacatccaaaataagtaagtttttataaaaaagttgtgtaataattactttatcaaaa 37928363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 225 - 329
Target Start/End: Complemental strand, 39786571 - 39786467
Alignment:
Q  225 aggcattggttaaacaaccaaaacaagtaagttttt-ataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattt 323  Q
    ||||||||||||| |||||||||||| ||| ||||| || ||||| |||||||||||||| || |||||||||  ||||||| ||||| ||||||| |||    
T  39786571 aggcattggttaagcaaccaaaacaaataacttttttattaaaag-tagtgtaattattatttaatcaaaagttaaaacttatattttcaagacaagttt 39786473  T
Q  324 tttatt 329  Q
    | ||||    
T  39786472 tctatt 39786467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 47537423 - 47537519
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttt 325  Q
    |||| ||||| |||| |||||| |||| ||||||||||||| | ||||||||||||||| ||||||| |  ||||||| ||||| |||||||||||||    
T  47537423 cattagttaagcaactaaaacaggtaactttttataaaaagtt-gtgtaattattacttaatcaaaaatcaaaacttatattttcaagacaaattttt 47537519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 23142770 - 23142702
Alignment:
Q  227 gcattggttaaacaaccaaaacaagtaagtttttat-aaaaaggtagtgtaattattacttgatcaaaa 294  Q
    |||||||||||||| |||||| |||||||||||||| ||||| || ||||||| |||||||||||||||    
T  23142770 gcattggttaaacatccaaaataagtaagtttttatgaaaaaagttgtgtaataattacttgatcaaaa 23142702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 24937827 - 24937929
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttt 325  Q
    ||||||||||||  |||||||| |||||| |||||||||||| || ||||||||||||||| || ||||||  |||  || |||||||| |||||||||     
T  24937827 ggcattggttaaggaaccaaaataagtaactttttataaaaa-gtggtgtaattattacttaattaaaagtcaaaatctatatttttaaaacaaattttc 24937925  T
Q  326 tatt 329  Q
    ||||    
T  24937926 tatt 24937929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 228 - 318
Target Start/End: Complemental strand, 41760455 - 41760365
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagaca 318  Q
    |||||||||| || ||||||  | |||| |||||| |||| || ||||||| |||||||||| |||| || ||||||||||||||||||||    
T  41760455 cattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgataaaaaataaaaacttacatttttaagaca 41760365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 34834696 - 34834773
Alignment:
Q  232 ggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttt 311  Q
    |||||| |||||||||||   ||||||||||||| |||||||  ||||||||||| ||||||| || |||||||||||||    
T  34834696 ggttaagcaaccaaaacattcaagtttttataaagaggtagt--aattattacttcatcaaaaataaaaacttacatttt 34834773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 244 - 329
Target Start/End: Complemental strand, 8896698 - 8896613
Alignment:
Q  244 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    |||||||||||||||| || ||||  | ||||||| ||||| ||||||||||||  | |||| |||||||||||||| ||| ||||    
T  8896698 aaaacaagtaagttttcatgaaaaaattgtgtaatcattacctgatcaaaagtaacatcttatatttttaagacaaaatttatatt 8896613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 7833862 - 7833794
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 294  Q
    |||||||||||| || |||||||||||||| |||||| |||| |||||| ||| |||| ||| ||||||    
T  7833862 ggcattggttaagcagccaaaacaagtaagattttattaaaaagtagtgcaataattagttggtcaaaa 7833794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 228 - 320
Target Start/End: Complemental strand, 22931974 - 22931882
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 320  Q
    |||||||||||||||||||| |||||| |||| |  |||| ||||||||||||||| |||  |||  |||  ||||||||||| | |||||||    
T  22931974 cattggttaaacaaccaaaataagtaaattttcaataaaaagtagtgtaattattaattgggcaattgtaacaacttacatttctgagacaaa 22931882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 229 - 341
Target Start/End: Original strand, 33194720 - 33194832
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttat 328  Q
    ||||||||| |||| |||| |||||| ||||||  |||| |||||||||| ||||||| |||||| ||   |  ||| ||||||||||||||  ||||||    
T  33194720 attggttaagcaactaaaataagtaaatttttaataaaaagtagtgtaatcattacttaatcaaatgtgatagtttatatttttaagacaaaacttttat 33194819  T
Q  329 tcaaggattcttt 341  Q
    | | |||||||||    
T  33194820 ttatggattcttt 33194832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 248 - 320
Target Start/End: Complemental strand, 34993224 - 34993152
Alignment:
Q  248 caagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 320  Q
    |||||||||||| || |||| || |||||||||||| || ||||||||||  | |||| ||||||||||||||    
T  34993224 caagtaagttttcatgaaaaagttgtgtaattattattttatcaaaagtaacatcttatatttttaagacaaa 34993152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 45907134 - 45907082
Alignment:
Q  244 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 296  Q
    |||| |||||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  45907134 aaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagt 45907082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 325
Target Start/End: Complemental strand, 12810265 - 12810166
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttt 325  Q
    |||| |||||||||| | |||||||| | | ||| || |||| || |||||||||||||||  |||||||||  | |||| |||||||||||||| ||||    
T  12810265 ggcaatggttaaacatctaaaacaagcatgctttcatgaaaaagttgtgtaattattactttgtcaaaagtaatatcttatatttttaagacaaaatttt 12810166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 231 - 324
Target Start/End: Complemental strand, 37532668 - 37532574
Alignment:
Q  231 tggttaaacaaccaaaacaagtaagttttt-ataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttt 324  Q
    ||||||| ||||| |||||||||| ||||| |||||||  | ||||||||||| ||| |||||||||  ||| ||| |||||||| | |||||||    
T  37532668 tggttaagcaaccgaaacaagtaacttttttataaaaaaatggtgtaattatttcttaatcaaaagtcgaaatttatatttttaatataaatttt 37532574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 243 - 329
Target Start/End: Original strand, 39386917 - 39387003
Alignment:
Q  243 caaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    |||||||||||| ||||||   ||| || || | ||||||||||||||||||||  ||| ||| ||||||| || ||||||||||||    
T  39386917 caaaacaagtaattttttaatgaaaagttgtatgattattacttgatcaaaagttaaaatttatatttttaggataaattttttatt 39387003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 16685729 - 16685794
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagttttta-taaaaaggtagtgtaattattacttgatcaaa 293  Q
    ||||||||| || |||||| ||||||||||||| | |||| || ||||||| ||||||||||||||    
T  16685729 attggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgatcaaa 16685794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 17659965 - 17660030
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagttttta-taaaaaggtagtgtaattattacttgatcaaa 293  Q
    ||||||||| || |||||| ||||||||||||| | |||| || ||||||| ||||||||||||||    
T  17659965 attggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgatcaaa 17660030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 23317894 - 23317845
Alignment:
Q  248 caagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    |||||||||||| ||||||| || ||||||| || |||||||||||||||    
T  23317894 caagtaagttttcataaaaaagtggtgtaatcataacttgatcaaaagta 23317845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 25780245 - 25780298
Alignment:
Q  276 aattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    ||||||||||| || ||||||  ||||||| |||||| ||||||||||||||||    
T  25780245 aattattacttaattaaaagtcaaaacttatatttttcagacaaattttttatt 25780298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 26241717 - 26241656
Alignment:
Q  232 ggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaa 293  Q
    |||||| |||| ||||||||||| ||||||  |||| ||||| ||||||||| |||||||||    
T  26241717 ggttaagcaactaaaacaagtaactttttaataaaaagtagtataattattatttgatcaaa 26241656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 33988545 - 33988492
Alignment:
Q  244 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    ||||||| ||| |||||||||||||| ||||||| |||||||| || |||||||    
T  33988545 aaaacaactaaatttttataaaaaggaagtgtaaatattactttataaaaagta 33988492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 320
Target Start/End: Original strand, 46300678 - 46300762
Alignment:
Q  236 aaacaaccaaaacaagtaag-tttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 320  Q
    ||||||| |||||||||||| |||||||||||||  | |||||||||||| |||| ||||||  |||| || ||||| ||||||||    
T  46300678 aaacaactaaaacaagtaaggtttttataaaaagtga-tgtaattattacatgataaaaagtcaaaacatatattttcaagacaaa 46300762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 30106 - 30034
Alignment:
Q  225 aggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    ||||||||||||||||  |||||||||||||||||||| ||||| | |||||||||||| || || |||||||    
T  30106 aggcattggttaaacactcaaaacaagtaagtttttatgaaaagtttgtgtaattattatttaattaaaagta 30034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 229 - 313
Target Start/End: Original strand, 4490779 - 4490862
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacattttta 313  Q
    ||||||||||||| |||||||| |||||||| || ||||| |||||||||||||| || |||||||||| ||| ||| |||||||    
T  4490779 attggttaaacaatcaaaacaaataagtttt-attaaaagatagtgtaattattattttatcaaaagtaaaaatttatattttta 4490862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 29032425 - 29032501
Alignment:
Q  244 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 320  Q
    |||||||| |||||||||| |||| || ||||||| ||||||||||||||||||  | |||| ||||||||||||||    
T  29032425 aaaacaagcaagtttttatgaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaa 29032501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 48338808 - 48338876
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 294  Q
    |||| ||||||| || |||||||||||||||||||||||||| || ||||||| ||||||| |||||||    
T  48338808 ggcaatggttaagcatccaaaacaagtaagtttttataaaaaagttgtgtaataattactttatcaaaa 48338876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 329
Target Start/End: Complemental strand, 34228372 - 34228273
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttat 328  Q
    ||||||||| |||  ||||| ||||| |||||||||||||  | || |||||||| || |||||||||  ||| ||| ||||||||||||||||||||||    
T  34228372 attggttaagcaattaaaacgagtaactttttataaaaagtga-tgaaattattatttaatcaaaagtcaaaatttatatttttaagacaaattttttat 34228274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 37043099 - 37043037
Alignment:
Q  231 tggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaa 293  Q
    |||||||||||| ||| ||||||||||||||  |||| ||||| |||| ||||||||||||||    
T  37043099 tggttaaacaactaaatcaagtaagtttttaataaaaagtagtataatcattacttgatcaaa 37043037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 228 - 329
Target Start/End: Complemental strand, 45408784 - 45408684
Alignment:
Q  228 cattggttaaacaaccaaaacaagtaa-gtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttttt 326  Q
    ||||||||||||||| |||||||||||  ||||||||||||  | |||||| |||||||| ||| |||||  ||| ||| ||||||||||||||| ||||    
T  45408784 cattggttaaacaacaaaaacaagtaacatttttataaaaa-atggtgtaaatattacttaatc-aaagtcaaaagttatatttttaagacaaatatttt 45408687  T
Q  327 att 329  Q
    |||    
T  45408686 att 45408684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 329
Target Start/End: Original strand, 55446733 - 55446830
Alignment:
Q  231 tggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    |||||||||| | |||| ||||||||||||||||||| || ||||||| ||||||| || |||||||  | |||| ||||  |||||||| ||||||||    
T  55446733 tggttaaacatctaaaagaagtaagtttttataaaaa-gttgtgtaatcattactttattaaaagtaacatcttatatttccaagacaaaatttttatt 55446830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 329
Target Start/End: Complemental strand, 2127461 - 2127368
Alignment:
Q  231 tggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    ||||||| ||||||||| |||||| |||||||||||  || ||||||||||||||| ||||||| |  |||   | ||| |||||||||||||||||||    
T  2127461 tggttaagcaaccaaaataagtaattttttataaaa--gtcgtgtaattattacttaatcaaaaatcaaaa---atattcttaagacaaattttttatt 2127368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 318
Target Start/End: Complemental strand, 2379719 - 2379631
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagaca 318  Q
    |||| |||| ||| ||||| |||||||||||||| |||| ||||||||||| |||||||||  |||| |  |||||||||||| ||||||    
T  2379719 attgattaagcaatcaaaataagtaagtttttattaaaaagtagtgtaattcttacttgat-taaaggaacaacttacattttcaagaca 2379631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 4020096 - 4020161
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 294  Q
    |||||||||  ||||||||||||||||||||||| ||||  | ||||||| ||||||| |||||||    
T  4020096 attggttaagtaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaatcaaaa 4020161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 15671233 - 15671165
Alignment:
Q  227 gcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 296  Q
    |||||||||||  |||||||  |||||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  15671233 gcattggttaag-aaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagt 15671165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 329
Target Start/End: Complemental strand, 42788448 - 42788343
Alignment:
Q  225 aggcattggttaaacaaccaaaacaagtaagtttttataaaaagg-tagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattt 323  Q
    ||||| || |||||||| ||||||  |||||||||||||||||   || ||||||||||| || |||||||||| ||| ||||||||| || ||||| ||    
T  42788448 aggcactgattaaacaatcaaaactggtaagtttttataaaaaaaataatgtaattattattttatcaaaagtaaaaatttacattttcaatacaaaatt 42788349  T
Q  324 tttatt 329  Q
     |||||    
T  42788348 gttatt 42788343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 243 - 328
Target Start/End: Complemental strand, 54801431 - 54801346
Alignment:
Q  243 caaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttat 328  Q
    ||||| |||||||||||||| ||||  | ||||||||||||||| | ||||||||  | |||| ||||| |||| |||||||||||    
T  54801431 caaaataagtaagtttttatgaaaaaattgtgtaattattactttagcaaaagtaacatcttatattttcaagataaattttttat 54801346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 257 - 329
Target Start/End: Complemental strand, 41287969 - 41287898
Alignment:
Q  257 ttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 329  Q
    |||||||||||  ||||||||||||||||| ||||||| |  ||||||| |||||||| ||||||||| ||||    
T  41287969 ttttataaaaaa-tagtgtaattattacttaatcaaaaatcaaaacttatatttttaaaacaaattttctatt 41287898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 296
Target Start/End: Original strand, 35322019 - 35322074
Alignment:
Q  241 accaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 296  Q
    ||||||| |||||||||||||| |||| ||| |||||||||||||| || ||||||    
T  35322019 accaaaagaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 35322074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 31069670 - 31069612
Alignment:
Q  234 ttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaa 292  Q
    |||| ||||||||| ||||| |||||||  |||| ||||||||||||||||||| ||||    
T  31069670 ttaagcaaccaaaataagtacgtttttaataaaaagtagtgtaattattacttggtcaa 31069612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 31494117 - 31494055
Alignment:
Q  232 ggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 294  Q
    ||||||||| ||||||||||||||||||||| ||||  | ||||||| |||| ||||| ||||    
T  31494117 ggttaaacatccaaaacaagtaagtttttatgaaaaaattgtgtaatcattatttgattaaaa 31494055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 42163724 - 42163655
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 296  Q
    ||||||||||| ||| |||||  |||||||||||||| |||| ||| |||||||||||||| || ||||||    
T  42163724 ggcattggttacaca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 42163655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 44291347 - 44291278
Alignment:
Q  226 ggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 296  Q
    |||||||||||| || |||||| |||||||| ||||| |||| ||| |||||||||||||| || ||||||    
T  44291347 ggcattggttaagca-ccaaaagaagtaagtatttattaaaaagtaatgtaattattacttaataaaaagt 44291278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 6785910 - 6785841
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttat-aaaaaggtagtgtaattattacttgatcaaaagta 297  Q
    |||||||||||| | |||||||| ||||||| || ||||| |  ||||||| ||||||||||||||||||    
T  6785910 attggttaaacatcaaaaacaagcaagttttcatgaaaaaagatgtgtaatcattacttgatcaaaagta 6785841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 26613180 - 26613115
Alignment:
Q  230 ttggttaaacaaccaaaacaagtaagtttttat-aaaaaggtagtgtaattattacttgatcaaaa 294  Q
    |||||||| || |||||||||||||||||| || ||||| ||  ||||||||||||||||| ||||    
T  26613180 ttggttaagcatccaaaacaagtaagttttcataaaaaaagttatgtaattattacttgattaaaa 26613115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 40491320 - 40491240
Alignment:
Q  228 cattggttaaacaaccaaaacaagta-agtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacat 308  Q
    ||||||||||||||||||||||| || | ||||||| ||||  || |||||||||||| |||| |||||||  |||||||||    
T  40491320 cattggttaaacaaccaaaacaaatatattttttat-aaaatataatgtaattattacatgatgaaaagtaacaacttacat 40491240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 22543 - 22472
Alignment:
Q  224 gaggcattggttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 296  Q
    |||||||||||||| || |||||| |||||||||||||| |||  ||| ||||||||||| ||||| ||||||    
T  22543 gaggcattggttaagca-ccaaaagaagtaagtttttattaaagagtaatgtaattattatttgataaaaagt 22472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 31466 - 31504
Alignment:
Q  229 attggttaaacaaccaaaacaagtaagtttttataaaaa 267  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  31466 attggttaagcaaccaaaacaagtaactttttataaaaa 31504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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