View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20061_high_21 (Length: 251)
Name: NF20061_high_21
Description: NF20061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20061_high_21 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 46 - 251
Target Start/End: Original strand, 2511748 - 2511955
Alignment:
| Q |
46 |
aaatataatggttgttctaaaccaaacatgaaaaat-tcaaaccaatttattggttttgtttggatcttgagatcattgattt-agttcttaccactttt |
143 |
Q |
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| T |
2511748 |
aaatataatggttgttctaaaccaaacatgaaaaaaatcaaaccaatttattggttttgtttggatcttcagatcattgattttagttcttaccactttt |
2511847 |
T |
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| Q |
144 |
agaataaagataatttgttcaaaataggatttgacaaagtcattagttcaaatttgagtcccccacatgacaaacactatagcacaagagaggcattgaa |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
2511848 |
agaataaagataatttgttcaaaataggatttgacaaagtcattagttcaaatttgagtcccccacatgacaaatagtatagcacaagagaggcattgaa |
2511947 |
T |
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| Q |
244 |
agctataa |
251 |
Q |
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|||||||| |
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| T |
2511948 |
agctataa |
2511955 |
T |
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