View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20061_high_3 (Length: 849)
Name: NF20061_high_3
Description: NF20061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20061_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 36785447 - 36785661
Alignment:
| Q |
14 |
taatactcaagctagggcaaaatggagtaaaggtgttattagtaaggatgaggctgctaaattcactgctgaaaattggcttcaagctagcatttggttg |
113 |
Q |
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| T |
36785447 |
taatactcaagctagggcaaaatggagtaaaggtgttattagtaaggatgaggctgctaaattcactgctgaaaattggcttcaagctagcacttggttg |
36785546 |
T |
|
| Q |
114 |
cctgccactggcattcctttcagtcctgaatttgagtcttgaaattatgcatgcatgcatatatttatatattagtttacttttagtttttatactttga |
213 |
Q |
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| T |
36785547 |
cctgccactggcattcctttcagtcctgaatttgagtcttgaaattatgcatgcatgcatatatttatatattagtttacttttagtttttatactttga |
36785646 |
T |
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| Q |
214 |
caagcatgaatagaa |
228 |
Q |
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||||||||||||||| |
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| T |
36785647 |
caagcatgaatagaa |
36785661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 570 - 833
Target Start/End: Original strand, 36786020 - 36786286
Alignment:
| Q |
570 |
acacaaagatatatatacccacacttttgttaacttcaatttgctcctaattatatatgttaaataattttttacaccaataataaggggaatacttaaa |
669 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
36786020 |
acacaaagatatatatacccacacttttgttaatttcaatatgctcctaattatatatgttaaataattttttacaccaataataaggtgaaaacttaaa |
36786119 |
T |
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| Q |
670 |
ttgattttctttttaatatggtaaatttgtaaaggaatatcgattttccataaatttattacaccaattttcttggatccatatttattgtacattattt |
769 |
Q |
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| T |
36786120 |
ttgattttctttttaatatggtaaatttgtaaaggaatatcgattttcaataaatttattacaccaattttcttggatccatatttattgtacattattt |
36786219 |
T |
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| Q |
770 |
---nnnnnnnnntattaaacatgtcctatatttagagatactgggaggtagttactcccttcattta |
833 |
Q |
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| T |
36786220 |
taaaaaaaaaaatattaaacacgtcctatatttagagatactgggaggtagttactcccttcattta |
36786286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 403 - 540
Target Start/End: Original strand, 36785881 - 36786018
Alignment:
| Q |
403 |
ttaatatattaatatttctatcaaaattgtttatccatcaatgaaataatataacatagtaactgtgtatgactcgactctatatactataaatagaata |
502 |
Q |
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| T |
36785881 |
ttaatctattaatatttctatcaaaattgtttatccatcaataaaataatataacatagtaactgtgtatgactcgactctatatactataaatagaata |
36785980 |
T |
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| Q |
503 |
atgctccttctatccttgcttagaaccacccatgtata |
540 |
Q |
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| T |
36785981 |
atgctccttctatccttgcttagaaccacccatgtata |
36786018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 306 - 402
Target Start/End: Original strand, 36785752 - 36785848
Alignment:
| Q |
306 |
gtagaagtaataataacgattatttggttgacatatttgtttcgttcgtgattgaggtttgaaatatttgactttcaattgagatttattcttatac |
402 |
Q |
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| T |
36785752 |
gtagaagtaataataacgattatttagttgacgtatttgcgtcgttcgtgattgaggtttgaaatatttaactttcatttgagatttgtccttatac |
36785848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 310 - 392
Target Start/End: Original strand, 50876802 - 50876883
Alignment:
| Q |
310 |
aagtaataataacgattatttggttgacatatttgtttcgttcgtgattgaggtttgaaatatttgactttcaattgagattt |
392 |
Q |
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| T |
50876802 |
aagtaataataatgattatttagttgatgtatttgtgtcgttcttaatt-atgtttgaaatatttgactttcatttgagattt |
50876883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 403 - 443
Target Start/End: Original strand, 50876926 - 50876966
Alignment:
| Q |
403 |
ttaatatattaatatttctatcaaaattgtttatccatcaa |
443 |
Q |
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| T |
50876926 |
ttaatctattaatatttctatcaaaattgtttatccatcaa |
50876966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 663 - 769
Target Start/End: Original strand, 50877177 - 50877285
Alignment:
| Q |
663 |
acttaaattgattttctttttaatatggtaaatttgtaaaggaatatcgattttccataaatttattac-accaattttcttggatc-catatttattgt |
760 |
Q |
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||||||| ||||||| | | ||||| |||||||||| |||| | ||||||||||||| ||||||||||| || |||||||||| ||| | |||||||| |
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| T |
50877177 |
acttaaaatgattttatctctaatagggtaaatttggaaagtagtatcgattttccacaaatttattactactaattttcttgaatctaaaatttattga |
50877276 |
T |
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| Q |
761 |
acattattt |
769 |
Q |
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||||||||| |
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| T |
50877277 |
acattattt |
50877285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 36078683 - 36078602
Alignment:
| Q |
60 |
gatgaggctgctaaattcactgctgaaaattggcttcaagctagcatttggttgcctgccactggcattcctttcagtcctg |
141 |
Q |
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||||||||||||| |||||| |||||| ||| |||||||||| | |||||| ||| || |||||||||||| || ||||| |
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| T |
36078683 |
gatgaggctgctagattcaccgctgaaccgtggattcaagctagtacttggttaccttccgctggcattccttacaatcctg |
36078602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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