View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20061_high_5 (Length: 606)
Name: NF20061_high_5
Description: NF20061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20061_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 227 - 475
Target Start/End: Original strand, 32266852 - 32267100
Alignment:
| Q |
227 |
gattgagtatcctcctccatcatagccttgttgatctttttctctttctcagaatgagaagccatgtgtccacaaagtgctttcaatgaaggaaaacctt |
326 |
Q |
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| T |
32266852 |
gattgagtatcctcctccatcatagccttgttgatctttttctctttctcagaatgagaagccatgtgtccacaaagtgctttcaatgaaggaaaacctt |
32266951 |
T |
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| Q |
327 |
tcccacattctttgcagaatttgatcatttcattttgttccaatgtggttnnnnnnnnnnnnnnnnnntgatgattataatgatgatgatgagaatgcac |
426 |
Q |
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| T |
32266952 |
tcccacattctttgcagaatttgatcatttcattttgttccaatgtggttgcagcagcagtagcagcatgatgattataatgatgatgatgagaatgcac |
32267051 |
T |
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| Q |
427 |
aaacctcattgttttcttgggattttctcttagaccataaatgaggttt |
475 |
Q |
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| T |
32267052 |
aaacctcattgttttcttgggattttctcttagaccataaatgaggttt |
32267100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 32266640 - 32266822
Alignment:
| Q |
18 |
ctctagacaacaacatcaaacatctagcaacctcttcttgttgttcctgttccatctcagaaacagatgaagaaccgccattaacagaagaagaagaagg |
117 |
Q |
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| T |
32266640 |
ctctagacaacaacatcaaacatctagcaacctcttcttgttgttcctgttccatctcagaaacagatgaagaaccaccattaacagaagaagaagaagg |
32266739 |
T |
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| Q |
118 |
ttgatgatttgaaagagtaatagacttgaacctaattcttctcttagatttccttagattcattgttgtagcagcaacacaaa |
200 |
Q |
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| T |
32266740 |
ttgctgatttgaaagagtaatagacttgaacctaattcttctcttagatttccttagattcattgttgtagcagcaacacaaa |
32266822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 548 - 584
Target Start/End: Original strand, 32267170 - 32267206
Alignment:
| Q |
548 |
ttatttctttcttctgtcatgtgtgttctgatgtgac |
584 |
Q |
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| T |
32267170 |
ttatttctttcttctgtcatgtgtgttctgatgtgac |
32267206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 19301397 - 19301476
Alignment:
| Q |
269 |
tctttctcagaatgagaagccatgtgtccacaaagtgctttcaatgaaggaaaacctttcccacattctttgcagaattt |
348 |
Q |
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| T |
19301397 |
tctttctcagagtgacaagccatgtgaccacacagtgctttcaatgatggaaaaccttttccacattctttgcagaattt |
19301476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 474
Target Start/End: Original strand, 19301508 - 19301560
Alignment:
| Q |
422 |
tgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggtt |
474 |
Q |
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||||||||||| |||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
19301508 |
tgcacaaacctagttgttttcttgggattctctctaagaccataaataaggtt |
19301560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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