View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20061_low_13 (Length: 347)
Name: NF20061_low_13
Description: NF20061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20061_low_13 |
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| [»] scaffold1030 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 35138958 - 35139277
Alignment:
| Q |
18 |
aaatctaaaagagaaaccttgcaatccccttgattcaccaatcttggtactgagtggtttgccaacgacattatgagttgtgaaaaaacctaacaca--- |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35138958 |
aaatctaaaagagaaaccttgcaatccccttgattcaccaatcttggtactgagtggtttgccaatgacattatgagttgtgaaaaaacctaacacacaa |
35139057 |
T |
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| Q |
115 |
--aagagttttgtatcaatataaatattttttatcaataaagaacagcaatcaatagtttgaaataaaagcaaaatttacattacataagatcccaaaac |
212 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35139058 |
caaagtgttttgtatcaatataaatattttgtatcaataaagaacagcaatcaatagtttgaaataaaagcaaaatttacattacataagatcccaaaac |
35139157 |
T |
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| Q |
213 |
ttatatgggaaaaagaaaccagcaaaaagttctctaagtaatggagaatgttnnnnnnnnnnnnngctagcacacggagacagatatgaacgtttctctt |
312 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35139158 |
ttatatgggaaaaataaaccagcaaaaagttctctaagtaatggagaatgttaaaaaatcaaaaagctagcacacggagacagatatgaacgtttctctt |
35139257 |
T |
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| Q |
313 |
taagccccctaatatctctg |
332 |
Q |
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|||||||||||||||||||| |
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| T |
35139258 |
taagccccctaatatctctg |
35139277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 35131650 - 35131969
Alignment:
| Q |
18 |
aaatctaaaagagaaaccttgcaatccccttgattcaccaatcttggtactgagtggtttgccaacgacattatgagttgtgaaaaaacctaacaca--- |
114 |
Q |
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| T |
35131650 |
aaatctaaaagagaaaccttgcaatccccttgattcttcaatcttggtactgagtggttttccaatgacatcatgatttgtgaaaaaacctaacacacaa |
35131749 |
T |
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| Q |
115 |
--aagagttttgtatcaatataaatattttttatcaataaagaacagcaatcaatagtttgaaataaaagcaaaatttacattacataagatcccaaaac |
212 |
Q |
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| T |
35131750 |
caaagtgttttgtatcaatataaataatttttatcaataaagaacaaaaatcaatagtttgaaataaaatcaaaatttacattacataatatcccaaaac |
35131849 |
T |
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| Q |
213 |
ttatatgggaaaaagaaaccagcaaaaagttctctaagtaatggagaatgtt-nnnnnnnnnnnnngctagcacacggagacagatatgaacgtttctct |
311 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |
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| T |
35131850 |
ttacatgggaaaaagaaaccagcaaaaagttctctaagtaatggagaatgttaaaaaaatccataggctagcacacaaagacatatatgaacgtttctct |
35131949 |
T |
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| Q |
312 |
ttaagccccctaatatctct |
331 |
Q |
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| T |
35131950 |
ttaagtcccataatatctct |
35131969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 14278699 - 14278947
Alignment:
| Q |
18 |
aaatctaaaagagaaaccttgcaatccccttgattcaccaatcttggtactgagtggtttgccaacgacattatgagttgtgaaaaaacctaacacaa-a |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| | |||||||||| ||||| ||||||| | |||| | |
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| T |
14278699 |
aaatctaaaagagaaaccttgcaatccccttgattcttcaattttggtgctgagtggtttgctgatgacattatgatttgtgggaaaaccttaaacaaca |
14278798 |
T |
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| Q |
117 |
gagttttgtatcaatataaata-ttttttatcaataaagaacagcaatcaatagtttgaaataaaag-caaaatttacattacataagatcccaaaactt |
214 |
Q |
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| T |
14278799 |
aagagttgtatcaatataaataattttttattaacaaacaacaatagttaata-tttgaaaagaaagtcaaaatttacattacataagattgaaaaactt |
14278897 |
T |
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| Q |
215 |
atatgggaaaaagaaaccagcaaaaagttctctaagtaatggagaatgtt |
264 |
Q |
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| T |
14278898 |
acgagggaagaaacaaccagcaaaaaggtctataagtaatggaaaatgtt |
14278947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 14284177 - 14284406
Alignment:
| Q |
18 |
aaatctaaaagagaaaccttgcaatccccttgattcaccaatcttggtactgagtggtttgccaacgacattatgagttgtgaaaaaacctaa---caca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| |||||||||| ||||| |||||| ||| ||| |
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| T |
14284177 |
aaatctaaaagagaaaccttgcaatccccttgattctccaattttgctactgagtgg-------gggacattatgatttgtggaaaaacataagacaaca |
14284269 |
T |
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| Q |
115 |
aagagttttgtatcaatataaatattttttatcaataaagaacagcaatcaatagtttgaaataaaagcaaaatttacattacataagatcccaaaactt |
214 |
Q |
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|||||||||||||||||||||||| ||| | |||||| |||| || | |||||||| || ||| |||| ||||||||||||||||| ||||||| |
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| T |
14284270 |
aagagttttgtatcaatataaatactttcaaataataaacaacaacagttaatagttt--aagaaagtcaaattttacattacataagat-tgaaaactt |
14284366 |
T |
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| Q |
215 |
atatgggaaaaagaaaccagcaaaaagttctctaagtaat |
254 |
Q |
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| T |
14284367 |
gtaagggaagaagcaaccaacaaaaagttctataagtaat |
14284406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1030 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 2760 - 2575
Alignment:
| Q |
72 |
tggtttgccaacgacattatgagttgtgaaaaaacctaacacaaagagttttgtatcaatataaatatttttt---atcaataaagaacagcaatcaata |
168 |
Q |
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||||||||| | |||||||||| |||| |||||||| | |||||||||||||||||||||||||||||| ||||| ||| |||| || |||||| |
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| T |
2760 |
tggtttgccgatgacattatgatctgtgggaaaaccta---cgaagagttttgtatcaatataaatatttttttttatcaacaaacaacaacagtcaata |
2664 |
T |
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| Q |
169 |
gtttgaaataaaagcaaaatttacattacataagatcccaaaacttatatgggaaaaagaaaccagcaaaaagttctctaagtaatgga |
257 |
Q |
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||| ||| ||| |||||||||||||||||||||| |||||||| ||||| || ||||| ||||||||||| ||||||||||| |
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| T |
2663 |
gttgaaaacaaagttaaaatttacattacataagatcgaaaaacttaagagggaagaaacaaccaacaaaaagttctataagtaatgga |
2575 |
T |
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