View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20061_low_16 (Length: 315)
Name: NF20061_low_16
Description: NF20061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20061_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 34686481 - 34686728
Alignment:
| Q |
12 |
agcagagagttcgagtaacacactaaatcttccaatcccatgtccgatgctagtgaatggttgtgagctcaacaagaagaaaaaatgaaaataatatcct |
111 |
Q |
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| T |
34686481 |
agcagagagttcgagtaacacactaaatcttccaatcccatgtccgatgctagtgaatggctgtgagctcaacaagaagaaaaaatgaaaataatatcct |
34686580 |
T |
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| Q |
112 |
tagaatgatattatttaaatatccttctaaataaacctaagccttctctattnnnnnnnnnnnnnnnnnnnnnnnnntcaaatcctgacatggatttttc |
211 |
Q |
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| T |
34686581 |
tagaatgatattatttaaatatccttctaaataaacctaagacttctctattaaaaaaatgaaggaaaaaaaataaatcaaatcctgacatggatttttc |
34686680 |
T |
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| Q |
212 |
gcaggttaggtcgtatgtctatgtaagcaagcctaaccttaaatataa |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34686681 |
gcaggttaggtcgtatgtctatgtaagcaagcctaaccttaaatataa |
34686728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 32723622 - 32723674
Alignment:
| Q |
12 |
agcagagagttcgagtaacacactaaatcttccaatcccatgtccgatgctag |
64 |
Q |
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| T |
32723622 |
agcagagagtctgagtaacatactaagtcttccaatcacatgtccgatgctag |
32723674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 26983781 - 26983828
Alignment:
| Q |
65 |
tgaatggttgtgagctcaacaagaagaaaaaatgaaaataatatcctt |
112 |
Q |
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| T |
26983781 |
tgaatggctgtgagctcaacaagaagaaaaaatgaaaataatatcctt |
26983828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 26983820 - 26983854
Alignment:
| Q |
129 |
aatatccttctaaataaacctaagccttctctatt |
163 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
26983820 |
aatatccttctaaacaaacctaagccttctctatt |
26983854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 26984615 - 26984653
Alignment:
| Q |
212 |
gcaggttaggtcgtatgtctatgtaagcaagcctaacct |
250 |
Q |
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| T |
26984615 |
gcaggttaggtcgtatgtccatataagcaagcctaacct |
26984653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 30226953 - 30226995
Alignment:
| Q |
121 |
attatttaaatatccttctaaataaacctaagccttctctatt |
163 |
Q |
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|||| ||||||||||||||||| |||| ||||||||||||||| |
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| T |
30226953 |
attacttaaatatccttctaaacaaacttaagccttctctatt |
30226995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 30227011 - 30227069
Alignment:
| Q |
189 |
tcaaatcctgacatggatttttcgcaggttaggtcgtatgtctatgtaagcaagcctaa |
247 |
Q |
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|||| ||||| ||| ||||| ||||||||||| |||||| | ||||||||||||||||| |
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| T |
30227011 |
tcaagtcctggcatagatttatcgcaggttagctcgtatctgtatgtaagcaagcctaa |
30227069 |
T |
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