View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20061_low_19 (Length: 271)

Name: NF20061_low_19
Description: NF20061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20061_low_19
NF20061_low_19
[»] chr7 (11 HSPs)
chr7 (144-253)||(859386-859495)
chr7 (144-253)||(1220663-1220772)
chr7 (144-253)||(1217390-1217499)
chr7 (144-258)||(13886412-13886526)
chr7 (144-258)||(13882910-13883022)
chr7 (152-258)||(4300314-4300420)
chr7 (144-189)||(4888947-4888992)
chr7 (152-189)||(4303215-4303252)
chr7 (144-181)||(29175573-29175610)
chr7 (152-188)||(1883298-1883334)
chr7 (144-188)||(30217608-30217652)
[»] chr2 (12 HSPs)
chr2 (143-258)||(15129167-15129282)
chr2 (152-258)||(27952550-27952656)
chr2 (152-258)||(27956386-27956492)
chr2 (152-254)||(31636093-31636195)
chr2 (144-258)||(33655376-33655490)
chr2 (144-253)||(22011182-22011291)
chr2 (174-253)||(31633884-31633963)
chr2 (143-258)||(22264185-22264299)
chr2 (144-258)||(35682004-35682117)
chr2 (192-253)||(2155765-2155826)
chr2 (206-254)||(8781323-8781371)
chr2 (192-253)||(2165721-2165782)
[»] chr3 (9 HSPs)
chr3 (144-258)||(43304183-43304297)
chr3 (144-253)||(43306902-43307011)
chr3 (144-258)||(53012778-53012890)
chr3 (151-245)||(3069113-3069207)
chr3 (144-258)||(3063962-3064078)
chr3 (144-188)||(365846-365890)
chr3 (192-246)||(45168530-45168584)
chr3 (157-188)||(2472952-2472983)
chr3 (193-232)||(19795067-19795106)
[»] chr8 (11 HSPs)
chr8 (147-258)||(42891896-42892007)
chr8 (144-258)||(22512273-22512387)
chr8 (162-258)||(23573351-23573447)
chr8 (162-254)||(23570355-23570447)
chr8 (186-258)||(18468508-18468580)
chr8 (169-250)||(6845112-6845193)
chr8 (157-245)||(37189630-37189717)
chr8 (192-258)||(22922076-22922142)
chr8 (157-245)||(18180926-18181013)
chr8 (144-189)||(24730821-24730866)
chr8 (169-230)||(42890182-42890243)
[»] chr1 (7 HSPs)
chr1 (144-258)||(50857670-50857783)
chr1 (144-251)||(13444217-13444324)
chr1 (144-212)||(13441860-13441928)
chr1 (206-258)||(42071546-42071598)
chr1 (192-253)||(8931022-8931083)
chr1 (144-188)||(31915338-31915382)
chr1 (157-188)||(43681261-43681292)
[»] chr4 (7 HSPs)
chr4 (147-258)||(22691060-22691171)
chr4 (157-255)||(22988694-22988792)
chr4 (157-253)||(22716425-22716521)
chr4 (162-252)||(6659561-6659651)
chr4 (143-258)||(24667430-24667551)
chr4 (157-254)||(13085321-13085417)
chr4 (153-246)||(19935267-19935359)
[»] chr5 (5 HSPs)
chr5 (144-258)||(21849196-21849310)
chr5 (162-253)||(40779017-40779108)
chr5 (144-246)||(21857122-21857224)
chr5 (144-246)||(21845127-21845229)
chr5 (186-253)||(19501180-19501247)
[»] chr6 (6 HSPs)
chr6 (152-232)||(29341043-29341123)
chr6 (157-250)||(11194429-11194521)
chr6 (144-258)||(18726883-18726995)
chr6 (164-229)||(18203253-18203318)
chr6 (152-188)||(8050125-8050161)
chr6 (200-248)||(11190305-11190353)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 144 - 253
Target Start/End: Complemental strand, 859495 - 859386
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 243  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  859495 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 859396  T
Q  244 ttcggcccac 253  Q
    ||||||||||    
T  859395 ttcggcccac 859386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 144 - 253
Target Start/End: Complemental strand, 1220772 - 1220663
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 243  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  1220772 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 1220673  T
Q  244 ttcggcccac 253  Q
    ||||||||||    
T  1220672 ttcggcccac 1220663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 144 - 253
Target Start/End: Complemental strand, 1217499 - 1217390
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 243  Q
    ||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  1217499 tgatgcaggagggttttattagtaattcagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 1217400  T
Q  244 ttcggcccac 253  Q
    ||||||||||    
T  1217399 ttcggcccac 1217390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 13886526 - 13886412
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 243  Q
    |||||||  ||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||| ||||| |||||| |||||||||||||    
T  13886526 tgatgcagaagggttttattagtaatttagtagtatttattatttagtcaaatcttagtaattttctagaactctctattattattacgttttattttat 13886427  T
Q  244 ttcggcccacaggtt 258  Q
    || ||||||| ||||    
T  13886426 tttggcccacgggtt 13886412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 13883022 - 13882910
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 243  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||  ||||| |||||| |||||||||||||    
T  13883022 tgatgcaggagggttttattagtaatttagtagtatttattatttagtcaaatcttagtaattttctagaac--tctattattattacgttttattttat 13882925  T
Q  244 ttcggcccacaggtt 258  Q
    || ||||||| ||||    
T  13882924 tttggcccacgggtt 13882910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 152 - 258
Target Start/End: Original strand, 4300314 - 4300420
Alignment:
Q  152 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccc 251  Q
    |||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| |||| ||||| |||||| ||||||||||||||| |||||    
T  4300314 gagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctaaaactctctattattattacgttttattttattttggccc 4300413  T
Q  252 acaggtt 258  Q
    || ||||    
T  4300414 acgggtt 4300420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 4888992 - 4888947
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattattta 189  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||    
T  4888992 tgatgcaggagaattttattagtaatttagtagtatttattattta 4888947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 4303215 - 4303252
Alignment:
Q  152 gaggattttattagtaatttagtagtatttattattta 189  Q
    |||| |||||||||||||||||||||||||||||||||    
T  4303215 gagggttttattagtaatttagtagtatttattattta 4303252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 29175573 - 29175610
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtattt 181  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  29175573 tgatgcaggagggttttattagtaatttagtagtattt 29175610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 1883298 - 1883334
Alignment:
Q  152 gaggattttattagtaatttagtagtatttattattt 188  Q
    |||| |||||||||||| |||||||||||||||||||    
T  1883298 gagggttttattagtaacttagtagtatttattattt 1883334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 30217608 - 30217652
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattattt 188  Q
    ||||||| |||| |||||| | |||||||||||||||||||||||    
T  30217608 tgatgcaagagggttttataactaatttagtagtatttattattt 30217652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 15129167 - 15129282
Alignment:
Q  143 atgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttatttta 242  Q
    |||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| |||||||||||||||||||    
T  15129167 atgatgcaggagggttttattaataatttagtagtatttattatttaaccaaatcttagtaattttctagaacttcctattattatttcgttttatttta 15129266  T
Q  243 tttcggcccacaggtt 258  Q
    ||||||||||| ||||    
T  15129267 tttcggcccacgggtt 15129282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 27952656 - 27952550
Alignment:
Q  152 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccc 251  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  27952656 gagggttttattaataatttagtagtatttattatttatccaaatcttagtaattttctagaactttctattattatttcgttttattttattttggccc 27952557  T
Q  252 acaggtt 258  Q
    || ||||    
T  27952556 acgggtt 27952550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 27956492 - 27956386
Alignment:
Q  152 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccc 251  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  ||||    
T  27956492 gagggttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctagaactttctattattatttcgttttattttattttagccc 27956393  T
Q  252 acaggtt 258  Q
    || ||||    
T  27956392 acgggtt 27956386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 31636093 - 31636195
Alignment:
Q  152 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccc 251  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  31636093 gagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttattttggccc 31636192  T
Q  252 aca 254  Q
    |||    
T  31636193 aca 31636195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 144 - 258
Target Start/End: Original strand, 33655376 - 33655490
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 243  Q
    ||||||| |||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  33655376 tgatgcaggagggttttattggtaatttagtagtatctattatttagccaaatcttagtaattttctagaactttctattattattttgttttattttat 33655475  T
Q  244 ttcggcccacaggtt 258  Q
    |||||||||| ||||    
T  33655476 ttcggcccacgggtt 33655490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 144 - 253
Target Start/End: Original strand, 22011182 - 22011291
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 243  Q
    ||||||| |||| ||||||   |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  22011182 tgatgcaggagggttttatctttaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 22011281  T
Q  244 ttcggcccac 253  Q
    || |||||||    
T  22011282 tttggcccac 22011291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 31633884 - 31633963
Alignment:
Q  174 tagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 253  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  31633884 tagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcattttattttatttcggcccac 31633963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 22264185 - 22264299
Alignment:
Q  143 atgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttatttta 242  Q
    ||||||||  |||||||| ||||||||||||||||||||  | |||| ||||||||||||||||||||| |||||||||| ||||||| ||||| |||||    
T  22264185 atgatgcagaaggattttcttagtaatttagtagtattttat-tttagccaaatcttagtaattttctagaactttctattattattttgttttgtttta 22264283  T
Q  243 tttcggcccacaggtt 258  Q
    ||||||| ||| ||||    
T  22264284 tttcggctcacgggtt 22264299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 258
Target Start/End: Original strand, 35682004 - 35682117
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 243  Q
    ||||||| |||| |||| ||||||||||  ||||||||  | |||| ||||||||||||||||||||| ||||||||||  |||||||||||| ||||||    
T  35682004 tgatgcaggagggttttcttagtaattttatagtattttat-tttagccaaatcttagtaattttctagaactttctattgttatttcgttttgttttat 35682102  T
Q  244 ttcggcccacaggtt 258  Q
    || | ||||||||||    
T  35682103 ttggacccacaggtt 35682117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 2155765 - 2155826
Alignment:
Q  192 caaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 253  Q
    ||||||||||| |||||||| |||||||||| ||||||| ||||| |||||||| |||||||    
T  2155765 caaatcttagtgattttctagaactttctattattattttgttttgttttattttggcccac 2155826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 8781323 - 8781371
Alignment:
Q  206 tttctataactttctatgattatttcgttttattttatttcggcccaca 254  Q
    |||||| |||||||||| ||||||||||||| |||||||||||||||||    
T  8781323 tttctagaactttctattattatttcgttttgttttatttcggcccaca 8781371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 2165721 - 2165782
Alignment:
Q  192 caaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 253  Q
    ||||||||||| ||||| || |||||| ||| ||||||| ||||| |||||||| |||||||    
T  2165721 caaatcttagtgattttttagaactttgtattattattttgttttgttttattttggcccac 2165782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 43304297 - 43304183
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 243  Q
    ||||||| |||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  43304297 tgatgcaggagggttttattagtaatttagtagcatttattatttagccaaatcttagtaattttctataactttctattagtatttcgttttattttat 43304198  T
Q  244 ttcggcccacaggtt 258  Q
    || ||||||| ||||    
T  43304197 tttggcccacgggtt 43304183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 144 - 253
Target Start/End: Complemental strand, 43307011 - 43306902
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 243  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||||||||||||||||||    
T  43307011 tgatgcaggagggttttattagtaatttagtagtatttattatttaaccaaatcttagtaattttctagaacattctattattatttcgttttattttat 43306912  T
Q  244 ttcggcccac 253  Q
    || |||||||    
T  43306911 tttggcccac 43306902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 258
Target Start/End: Original strand, 53012778 - 53012890
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 243  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||  ||||| ||||||  ||||||||||||    
T  53012778 tgatgcaggagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaac--tctattattattatgttttattttat 53012875  T
Q  244 ttcggcccacaggtt 258  Q
    ||  |||||| ||||    
T  53012876 tttagcccacgggtt 53012890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 3069207 - 3069113
Alignment:
Q  151 cgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttattt 245  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| ||||  |||| |||||| |||||||||||||||    
T  3069207 cgagggttttattagtaatttagtagtatttattatttagccaaatctttgtaattctctagaactcactattattattacgttttattttattt 3069113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 3064078 - 3063962
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgat--tatttcgttttatttt 241  Q
    ||||||| |||| |||| |||||||||||||||||||||||||||| |||||||||||||||| |||| ||||   ||| ||  |||| |||||||||||    
T  3064078 tgatgcaggagggttttgttagtaatttagtagtatttattatttagccaaatcttagtaattctctagaactcgttattattatattacgttttatttt 3063979  T
Q  242 atttcggcccacaggtt 258  Q
    |||| ||||||| ||||    
T  3063978 attttggcccacgggtt 3063962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 365890 - 365846
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattattt 188  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  365890 tgatgcaggaggattttattagtaatttagtagtatttattattt 365846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 45168584 - 45168530
Alignment:
Q  192 caaatcttagtaattttctataactttctatgattatttcgttttattttatttc 246  Q
    ||||| |||||||||||||| ||| |||||| |||||||||||||||||||||||    
T  45168584 caaattttagtaattttctaaaaccttctattattatttcgttttattttatttc 45168530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 188
Target Start/End: Complemental strand, 2472983 - 2472952
Alignment:
Q  157 ttttattagtaatttagtagtatttattattt 188  Q
    ||||||||||||||||||||||||||||||||    
T  2472983 ttttattagtaatttagtagtatttattattt 2472952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 19795067 - 19795106
Alignment:
Q  193 aaatcttagtaattttctataactttctatgattatttcg 232  Q
    ||||||||||||||||||| |||||||||| |||||||||    
T  19795067 aaatcttagtaattttctagaactttctattattatttcg 19795106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 42892007 - 42891896
Alignment:
Q  147 tgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 246  Q
    |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||     
T  42892007 tgcaggagggttttattagtaatttagtagtatttattatttaaccaaatcttagtaattttctagaactttctattattatttcgttttattttatttt 42891908  T
Q  247 ggcccacaggtt 258  Q
     |||||| ||||    
T  42891907 agcccacgggtt 42891896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 22512387 - 22512273
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 243  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| ||| |||||||||||| |||||||    
T  22512387 tgatgcaggagagttttattagtaatttagtagtatttattatttagctaaatcttagtaattttctagaactttatattattatttcgtttcattttat 22512288  T
Q  244 ttcggcccacaggtt 258  Q
    |||||||||||||||    
T  22512287 ttcggcccacaggtt 22512273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 162 - 258
Target Start/End: Original strand, 23573351 - 23573447
Alignment:
Q  162 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccacaggtt 258  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||| ||||||||    
T  23573351 ttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttatttcgttttattttatttcggctcacaggtt 23573447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 23570355 - 23570447
Alignment:
Q  162 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccaca 254  Q
    ||||||||||  ||||||||||||||||  |||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| ||||||    
T  23570355 ttagtaattttatagtatttattatttaatcaaatcttagtaattttctagaactttctatttttatttcgttttattttatttcgacccaca 23570447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 18468508 - 18468580
Alignment:
Q  186 tttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccacaggtt 258  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||||||||| |||||||| ||||||| ||||    
T  18468508 tttaaccaaatcttagtaattttctagaactttctattattatttcgttttgttttattttggcccacgggtt 18468580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 6845112 - 6845193
Alignment:
Q  169 tttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcc 250  Q
    |||| ||||||||||||||||  |||||||||||||||||||| |||| ||||| |||||| ||||| ||||||||| ||||    
T  6845112 tttattagtatttattatttagtcaaatcttagtaattttctaaaactctctattattattacgtttgattttattttggcc 6845193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 37189630 - 37189717
Alignment:
Q  157 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttattt 245  Q
    |||| ||||||||||||||||||||  | |||| |||||||||||||| ||| || |||||| ||| ||||||| ||||||||||||||    
T  37189630 ttttcttagtaatttagtagtattttat-tttagccaaatcttagtaactttttagaactttatattattattttgttttattttattt 37189717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 22922142 - 22922076
Alignment:
Q  192 caaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccacaggtt 258  Q
    ||||||||||| |||||||| |||||||||| ||||||| ||||| |||||||| ||||||| ||||    
T  22922142 caaatcttagtgattttctagaactttctattattattttgttttgttttattttggcccacgggtt 22922076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 18181013 - 18180926
Alignment:
Q  157 ttttattagtaatttagtagtatttattatttatc-caaatcttagtaattttctataactttctatgattatttcgttttattttattt 245  Q
    |||| ||||||||||||||||||||  |||||| | ||||||||| ||||||| || || |||||||  |||||||||||| ||||||||    
T  18181013 ttttcttagtaatttagtagtattt--tatttaactcaaatcttaataattttttagaaatttctattcttatttcgttttgttttattt 18180926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 24730821 - 24730866
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattattta 189  Q
    ||||||| |||| ||||||||||||||||||||||||||| |||||    
T  24730821 tgatgcaggagggttttattagtaatttagtagtatttatgattta 24730866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 42890182 - 42890243
Alignment:
Q  169 tttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattattt 230  Q
    |||| |||||| ||||||||| ||||||   |||||||||||| |||||||||| |||||||    
T  42890182 tttattagtatctattatttagccaaatggaagtaattttctagaactttctattattattt 42890243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 50857783 - 50857670
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 243  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| ||||||    
T  50857783 tgatgcaggagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttgttttat 50857684  T
Q  244 ttcggcccacaggtt 258  Q
    || ||||||| ||||    
T  50857683 tt-ggcccacgggtt 50857670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 13444324 - 13444217
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 243  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | || ||||||| ||||||||||||||||||||    
T  13444324 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaattttagtaattttcaagaattttctattattatttcgttttattttat 13444225  T
Q  244 ttcggccc 251  Q
    || |||||    
T  13444224 tttggccc 13444217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 13441928 - 13441860
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctat 212  Q
    |||||||  ||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  13441928 tgatgcagaagggttttgttagtaatttagtagtatttattatttagccaaatcatagtaattttctat 13441860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 42071598 - 42071546
Alignment:
Q  206 tttctataactttctatgattatttcgttttattttatttcggcccacaggtt 258  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||| |||||    
T  42071598 tttctagaactttctattattatttcgttttattttatttcggcccaaaggtt 42071546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 8931022 - 8931083
Alignment:
Q  192 caaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 253  Q
    ||||||||||| |||||||| |||||||||| ||||||| ||||| |||||||| |||||||    
T  8931022 caaatcttagtgattttctagaactttctattattattttgttttgttttattttggcccac 8931083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 31915338 - 31915382
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattattt 188  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||    
T  31915338 tgatgcatgagggttttattagtaatttagtagtatttattattt 31915382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 188
Target Start/End: Original strand, 43681261 - 43681292
Alignment:
Q  157 ttttattagtaatttagtagtatttattattt 188  Q
    ||||||||||||||||||||||||||||||||    
T  43681261 ttttattagtaatttagtagtatttattattt 43681292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 22691060 - 22691171
Alignment:
Q  147 tgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 246  Q
    |||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  22691060 tgcaggagggttttattaataatttagtagtatttattatttagccaaatcttagtaattttctagaactttgtattattatttcgttttattttatttc 22691159  T
Q  247 ggcccacaggtt 258  Q
     |||||| ||||    
T  22691160 agcccactggtt 22691171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 157 - 255
Target Start/End: Complemental strand, 22988792 - 22988694
Alignment:
Q  157 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccacag 255  Q
    |||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||||||| ||||||||    
T  22988792 ttttattagtaatttaatagtatttattatttagccaaatcttaataattttctagaactttctattattatttctttttattttatttcagcccacag 22988694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 22716425 - 22716521
Alignment:
Q  157 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 253  Q
    |||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||||||| ||||||    
T  22716425 ttttattagtaatttaatagtatttattatttagccaaatcttaataattttctagaactttctattattatttctttttattttatttcagcccac 22716521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 6659651 - 6659561
Alignment:
Q  162 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccca 252  Q
    ||||||||||   ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  6659651 ttagtaattttacagtatttattatttagccaaatcttagtaattttctagaactttctattattattttgttttattttatttcggccca 6659561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 24667430 - 24667551
Alignment:
Q  143 atgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttcta-taa-----ctttctatgattatttcgtttt 236  Q
    |||||||| ||||  ||||||| ||||||||||||| |||||||||| ||||||| |||||||||| || |||     |||||||| |||||||| ||||    
T  24667430 atgatgcaggagggctttattattaatttagtagtagttattatttagccaaatcgtagtaattttttagtaattcatctttctattattatttcatttt 24667529  T
Q  237 attttatttcggcccacaggtt 258  Q
    |||||||||||| |||| ||||    
T  24667530 attttatttcggtccacgggtt 24667551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 254
Target Start/End: Complemental strand, 13085417 - 13085321
Alignment:
Q  157 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccaca 254  Q
    |||| ||||||||||  ||||||||  | |||| ||| ||||||||||| ||||| |||||||||| ||||||||||||| |||||||||||| ||||    
T  13085417 tttttttagtaattttatagtattttat-tttagccacatcttagtaatattctagaactttctattattatttcgttttgttttatttcggctcaca 13085321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 19935267 - 19935359
Alignment:
Q  153 aggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 246  Q
    |||||||| ||||||||||||||||||||  | ||||  ||||||||| | |||||  | |||||||||| ||||||||||||| |||||||||    
T  19935267 aggattttcttagtaatttagtagtattttat-tttagtcaaatcttaatcatttttcagaactttctattattatttcgttttgttttatttc 19935359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 21849310 - 21849196
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 243  Q
    |||||||||||| |||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||||    
T  21849310 tgatgcacgagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttattttgttttattttat 21849211  T
Q  244 ttcggcccacaggtt 258  Q
    |||||||||| ||||    
T  21849210 ttcggcccacgggtt 21849196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 162 - 253
Target Start/End: Complemental strand, 40779108 - 40779017
Alignment:
Q  162 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 253  Q
    ||||||||||   ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  40779108 ttagtaattttacagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttatttcggcccac 40779017  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 144 - 246
Target Start/End: Complemental strand, 21857224 - 21857122
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 243  Q
    |||||||||||| |||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||||    
T  21857224 tgatgcacgagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttattttgttttattttat 21857125  T
Q  244 ttc 246  Q
    |||    
T  21857124 ttc 21857122  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 246
Target Start/End: Complemental strand, 21845229 - 21845127
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 243  Q
    ||||||| |||| |||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||||    
T  21845229 tgatgcaagagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttattttgttttattttat 21845130  T
Q  244 ttc 246  Q
    |||    
T  21845129 ttc 21845127  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 19501247 - 19501180
Alignment:
Q  186 tttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 253  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||    
T  19501247 tttacccaaatcttagtaattttctaaaactttctattattattttgttttgttttatttcggcccac 19501180  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 29341123 - 29341043
Alignment:
Q  152 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcg 232  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| |||||||||    
T  29341123 gagggttttattagtaatttagtagtatttattttttagccaaatcttagtaattttctaaaactttctattattatttcg 29341043  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 11194429 - 11194521
Alignment:
Q  157 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcc 250  Q
    |||| ||||||||||||||||||||  | |||| ||||||||||||||||||||| |||||||||  ||||||| ||||| |||||||||||||    
T  11194429 ttttcttagtaatttagtagtattttat-tttagccaaatcttagtaattttctagaactttctagtattattttgttttgttttatttcggcc 11194521  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 258
Target Start/End: Original strand, 18726883 - 18726995
Alignment:
Q  144 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 243  Q
    ||||||| |||| |||| ||||||||||  |||| |||  | |||| |||||||||||| |||||||| |||||||||| ||||||||||||| ||||||    
T  18726883 tgatgcaggagggtttttttagtaattttatagttttttat-tttagccaaatcttagtcattttctagaactttctattattatttcgtttt-ttttat 18726980  T
Q  244 ttcggcccacaggtt 258  Q
    |||||||||| ||||    
T  18726981 ttcggcccacgggtt 18726995  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 18203253 - 18203318
Alignment:
Q  164 agtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatt 229  Q
    ||||||||  ||||||||||||||||  |||||||||||||||||||| |||| ||||| ||||||    
T  18203253 agtaattttatagtatttattatttagtcaaatcttagtaattttctagaactctctattattatt 18203318  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 8050161 - 8050125
Alignment:
Q  152 gaggattttattagtaatttagtagtatttattattt 188  Q
    |||| |||| |||||||||||||||||||||||||||    
T  8050161 gaggtttttcttagtaatttagtagtatttattattt 8050125  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 11190305 - 11190353
Alignment:
Q  200 agtaattttctataactttctatgattatttcgttttattttatttcgg 248  Q
    |||||||||||| |||||||||| ||||| | ||||| |||||||||||    
T  11190305 agtaattttctagaactttctattattatattgttttgttttatttcgg 11190353  T

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