View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20061_low_20 (Length: 268)
Name: NF20061_low_20
Description: NF20061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20061_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 38 - 250
Target Start/End: Original strand, 1792337 - 1792565
Alignment:
| Q |
38 |
aactttttccagtcatatagtgatccatatgatcaaactgctagtgtttcattggttatgcttccattgctggcttcaagtttgatgcttgttcatttg- |
136 |
Q |
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| T |
1792337 |
aactttttccagtcatatagtgatccatatgatcaaactgctagtgtttcattggttatgcttccattgttggcttcaagtttgatgcttgttcatttgt |
1792436 |
T |
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| Q |
137 |
---------------tcaaaagacaaatacatagatgatatcacacgtccactatctaaggtttaagaaatatggaaaagaattttcctctgnnnnnnng |
221 |
Q |
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| T |
1792437 |
caaaagacaaatacatcaaaagacaaatacatagatgatatcacacgtccactatctaaggtgtaagaaatctggaaaagaattttcctctgaaaaaaag |
1792536 |
T |
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| Q |
222 |
aagcatgatgaattcaaagacttcaaaag |
250 |
Q |
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| T |
1792537 |
aagcatgatgaattcaaagacttcaaaag |
1792565 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 43307826 - 43307781
Alignment:
| Q |
22 |
ttctggctggaaatagaactttttccagtcatatagtgatccatat |
67 |
Q |
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| T |
43307826 |
ttctggctggaaatagaactttttccagtcatgtagggatccatat |
43307781 |
T |
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