View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20061_low_25 (Length: 221)
Name: NF20061_low_25
Description: NF20061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20061_low_25 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 6939397 - 6939308
Alignment:
| Q |
113 |
atgcgagacatgagaaaagaaggcgctggataaattgcatcaatcaattacacggtgaggatgtcatgtggccttttactccagttttca |
202 |
Q |
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| T |
6939397 |
atgcgagacatgagaaaagaaggcgctggataaattgcatcaatcaattacacggtgaggatgtcatgtggccttttactccagttttca |
6939308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 79 - 191
Target Start/End: Original strand, 6526797 - 6526909
Alignment:
| Q |
79 |
attgtctgcttttctttttgtgtcggctcagaaaatgcgagacatgagaaaagaaggcgctggataaattgcatcaatcaattacacggtgaggatgtca |
178 |
Q |
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| T |
6526797 |
attgtctgtttttcttcttgtgtcttcccaggaaacatgagacttgagaaaagaagccgatgaattaattgcatcaaccaattacatggtgaggatgtca |
6526896 |
T |
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| Q |
179 |
tgtggccttttac |
191 |
Q |
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| T |
6526897 |
tgtggccttttac |
6526909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 79 - 191
Target Start/End: Original strand, 6848377 - 6848489
Alignment:
| Q |
79 |
attgtctgcttttctttttgtgtcggctcagaaaatgcgagacatgagaaaagaaggcgctggataaattgcatcaatcaattacacggtgaggatgtca |
178 |
Q |
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| T |
6848377 |
attgtctgtttttcttcttgtgtcttcccaggaaacacgagacttgagaaaagaagccgatgaattaattgcatcaaccaattacatggtgaggatgcca |
6848476 |
T |
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| Q |
179 |
tgtggccttttac |
191 |
Q |
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| T |
6848477 |
tgtggccttttac |
6848489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 6558078 - 6558152
Alignment:
| Q |
117 |
gagacatgagaaaagaaggcgctggataaattgcatcaatcaattacacggtgaggatgtcatgtggccttttac |
191 |
Q |
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| T |
6558078 |
gagacttgagaaaaaaagccgatgaattacttgcatcaacaaattacatggtgaggatgtcatgtggccttttac |
6558152 |
T |
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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 6943699 - 6943671
Alignment:
| Q |
28 |
ttgttattcttctgactttgtgtcccata |
56 |
Q |
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| T |
6943699 |
ttgttattcttctgactttgtgtcccata |
6943671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 79 - 191
Target Start/End: Original strand, 11504 - 11616
Alignment:
| Q |
79 |
attgtctgcttttctttttgtgtcggctcagaaaatgcgagacatgagaaaagaaggcgctggataaattgcatcaatcaattacacggtgaggatgtca |
178 |
Q |
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| T |
11504 |
attgtctgtttttcttcttgtgtcttcccaggaaacatgagacttgagaaaagaagccgatgaattaattgcatcaaccaattacatggtgaggatgtca |
11603 |
T |
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| Q |
179 |
tgtggccttttac |
191 |
Q |
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| T |
11604 |
tgtggccttttac |
11616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 49619041 - 49618971
Alignment:
| Q |
29 |
tgttattcttctgactttgtgtcccataattcttagtctatttaacattaattgtctgcttttctttttgt |
99 |
Q |
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| T |
49619041 |
tgttcttcttatgactttgtgtcgcataattttcagtctaattaacgataattgtctgcttttctttttgt |
49618971 |
T |
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