View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20061_low_27 (Length: 218)
Name: NF20061_low_27
Description: NF20061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20061_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 196
Target Start/End: Original strand, 51857434 - 51857626
Alignment:
| Q |
4 |
tcttccaaacactcccttaatactatttatatgtggcttatttattaatgcaagtagatgagtaaaatattgacagggacatgggtattttgggaggtct |
103 |
Q |
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| T |
51857434 |
tcttccaaacactcccttaatactatttatatgtggcttatttattaatgcaagtagatgagtaaaatattgacagggacttgggtattttgggaggcct |
51857533 |
T |
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| Q |
104 |
aagtgtcatatctggtagtatgagatgcttggaccttggtttagtatttaagtggcttggttcttccttcttgacagctagcttttaggcaga |
196 |
Q |
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| T |
51857534 |
aagtgtcatatctggtagtatgagatgcttggaccttggtttagtatttaagtggcttggttcttccttcttgacagctagcttttaggcaga |
51857626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 34866624 - 34866525
Alignment:
| Q |
1 |
agctcttccaaacactcccttaatactatttatatgtggcttatttattaatgcaagtagatgagtaaaatattgacagggacatgggtattttgggagg |
100 |
Q |
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| T |
34866624 |
agctcttccaaacactcccttaattcaatttataggtggcttatttattaatgcaagtaaataagtaaaatattgacaggaacttgggtattttgggagg |
34866525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 34866505 - 34866447
Alignment:
| Q |
145 |
tagtatttaagtggcttggttcttccttcttgacagctagcttttaggcagatttctcc |
203 |
Q |
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| T |
34866505 |
tagtatttgagttgttaggttcttccttcttgacagctagctttaagggagatttctcc |
34866447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 39388352 - 39388396
Alignment:
| Q |
146 |
agtatttaagtggcttggttcttccttcttgacagctagctttta |
190 |
Q |
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| T |
39388352 |
agtatttaagtggattggttcttccctcttgatagctagctttta |
39388396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 31680413 - 31680455
Alignment:
| Q |
148 |
tatttaagtggcttggttcttccttcttgacagctagctttta |
190 |
Q |
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| T |
31680413 |
tatttaagtagcttggttcttccctcttgatagctagctttta |
31680455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 44689685 - 44689737
Alignment:
| Q |
138 |
cttggtttagtatttaagtggcttggttcttccttcttgacagctagctttta |
190 |
Q |
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| T |
44689685 |
cttggtttagtccttaagtggcttggttcttcctccttggcagctagttttta |
44689737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 846365 - 846321
Alignment:
| Q |
146 |
agtatttaagtggcttggttcttccttcttgacagctagctttta |
190 |
Q |
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| T |
846365 |
agtatttaagtggcttggttcttcccttttgacagctaactttta |
846321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 8422903 - 8422862
Alignment:
| Q |
146 |
agtatttaagtggcttggttcttccttcttgacagctagctt |
187 |
Q |
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| T |
8422903 |
agtatttaagtggcttggttcttcccccttgatagctagctt |
8422862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 48735561 - 48735517
Alignment:
| Q |
146 |
agtatttaagtggcttggttcttccttcttgacagctagctttta |
190 |
Q |
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| T |
48735561 |
agtatttaagtggctcggttcttccctcttgataggtagctttta |
48735517 |
T |
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