View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20061_low_4 (Length: 785)
Name: NF20061_low_4
Description: NF20061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20061_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 772; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 772; E-Value: 0
Query Start/End: Original strand, 1 - 780
Target Start/End: Original strand, 35071814 - 35072593
Alignment:
| Q |
1 |
tctagtctcaacacccttcatctcgcatacaacaatctcagcggaggattacctaactctctcgctggttccggaattcagagtttttggatcaataaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071814 |
tctagtctcaacacccttcatctcgcatacaacaatctcagcggaggattacctaactctctcgctggttccggaattcagagtttttggatcaataaca |
35071913 |
T |
|
| Q |
101 |
atttacctgggttaaccggttcaatcactgtgatttccaacatgacattgttaactcaggtatggcttcatgtgaataaattcaccggtccaattccaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071914 |
atttacctgggttaaccggttcaatcactgtgatttccaacatgacattgttaactcaggtatggcttcatgtgaataaattcaccggtccaattccaga |
35072013 |
T |
|
| Q |
201 |
tttatcgcaatgcaatagtataaaagatctgcaacttagggataatcagttaactggtgtggttcctgattctctggtgagcatgtctagcttgcagaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35072014 |
tttatcgcaatgcaatagtataaaagatctgcaacttagggataatcagttaactggtgtggttcctgattctctggtgagcatgtctggcttgcagaat |
35072113 |
T |
|
| Q |
301 |
gttactctaagaaataatcagcttcagggacctgttccggtgttcggtaaagatgtgaaatataattctgatgatatcagtcataataacttttgtaata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072114 |
gttactctaagaaataatcagcttcagggacctgttccggtgttcggtaaagatgtgaaatataattctgatgatatcagtcataataacttttgtaata |
35072213 |
T |
|
| Q |
401 |
ataatgcatctgtaccttgtgatgctagggttatggatttgcttcatattgttggtgggtttgggtaccctattcaattcgccaagtcatggacagggaa |
500 |
Q |
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| T |
35072214 |
ataatgcatctgtaccttgtgatgctagggttatggatttgcttcatattgttggtgggtttgggtaccctattcaattcgcgaagtcatggacagggaa |
35072313 |
T |
|
| Q |
501 |
tgatccttgtaaggattggttgtgtgttatatgtggtgggggtaagattaccaagttgaatttcgcgaagcagggtttgcagggaacaatttcccctgct |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072314 |
tgatccttgtaaggattggttgtgtgttatatgtggtgggggtaagattaccaagttgaatttcgcgaagcagggtttgcagggaacaatttcccctgct |
35072413 |
T |
|
| Q |
601 |
tttgccaatttgactgatttgacggctttgtatctaaatgggaataatttgactggttctatacctcaaaatttagctacattgtctcaacttgagactc |
700 |
Q |
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| T |
35072414 |
tttgccaatttgactgatttgacggctttgtatctaaatgggaataatttgactggttctatacctcaaaatttagctacattgtctcaacttgagactc |
35072513 |
T |
|
| Q |
701 |
ttgatgtctctaacaatgatctatcaggcgaggttcccaaattctcaccaaaggtgaagtttataactgatggtaatgtt |
780 |
Q |
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| T |
35072514 |
ttgatgtctctaacaatgatctatcaggcgaggttcccaaattctcaccaaaggtgaagtttataactgatggtaatgtt |
35072593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 187 - 356
Target Start/End: Original strand, 33919983 - 33920152
Alignment:
| Q |
187 |
ggtccaattccagatttatcgcaatgcaatagtataaaagatctgcaacttagggataatcagttaactggtgtggttcctgattctctggtgagcatgt |
286 |
Q |
| |
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||||| |||| |||||||||||||||||||| |||| | ||||||||||||||||||| ||||||||| || || ||| |||| | || | ||| |||| |
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| T |
33919983 |
ggtcctattctagatttatcgcaatgcaataatatatatgatctgcaacttagggatagtcagttaaccggcgttgttactgagtttccgatgaatatgt |
33920082 |
T |
|
| Q |
287 |
ctagcttgcagaatgttactctaagaaataatcagcttcagggacctgttccggtgttcggtaaagatgt |
356 |
Q |
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| T |
33920083 |
ctaggttgaagaatgttactccgagacataatgtgcttcagggacctgttctggttttcaataaagatgt |
33920152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 602 - 728
Target Start/End: Complemental strand, 33919944 - 33919817
Alignment:
| Q |
602 |
ttgccaatttgactgatttgacggctttgtatctaaa-tgggaataatttgactggttctatacctcaaaatttagctacattgtctcaacttgagactc |
700 |
Q |
| |
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|||||||||||||| |||||| | |||||||||||| ||| |||||||||| |||||||||||||| | || ||||||||| ||| ||||||||| |
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| T |
33919944 |
ttgccaatttgactaatttgaagaatttgtatctaaaatggaaataatttgagtggttctatacctctgagattgactacattgtttcagtttgagactc |
33919845 |
T |
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| Q |
701 |
ttgatgtctctaacaatgatctatcagg |
728 |
Q |
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||||||||||||||||| | |||||||| |
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| T |
33919844 |
ttgatgtctctaacaataacctatcagg |
33919817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 559 - 665
Target Start/End: Complemental strand, 38161196 - 38161090
Alignment:
| Q |
559 |
aatttcgcgaagcagggtttgcagggaacaatttcccctgcttttgccaatttgactgatttgacggctttgtatctaaatgggaataatttgactggtt |
658 |
Q |
| |
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||||| ||||||||| |||| | ||||| ||||| |||| |||| |||||||||||||||| | ||||||||| ||||| ||||||||||| |||| |
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| T |
38161196 |
aatttagcgaagcagaatttgaatggaactatttcgtctgcatttgggaatttgactgatttgaggaatttgtatctgaatggtaataatttgacaggtt |
38161097 |
T |
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| Q |
659 |
ctatacc |
665 |
Q |
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| ||||| |
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| T |
38161096 |
caatacc |
38161090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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