View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20061_low_8 (Length: 483)

Name: NF20061_low_8
Description: NF20061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20061_low_8
NF20061_low_8
[»] chr6 (4 HSPs)
chr6 (18-375)||(8532012-8532373)
chr6 (385-471)||(8531866-8531952)
chr6 (75-134)||(20786750-20786809)
chr6 (75-134)||(24184675-24184734)
[»] chr5 (5 HSPs)
chr5 (156-299)||(3383878-3384026)
chr5 (18-121)||(3383355-3383458)
chr5 (385-471)||(5154315-5154401)
chr5 (303-375)||(5154183-5154255)
chr5 (73-131)||(42632882-42632940)
[»] chr3 (8 HSPs)
chr3 (303-372)||(26305404-26305473)
chr3 (73-134)||(49962433-49962494)
chr3 (102-217)||(26305271-26305386)
chr3 (75-134)||(408193-408252)
chr3 (75-134)||(415690-415749)
chr3 (75-134)||(38792558-38792617)
chr3 (77-123)||(6458048-6458094)
chr3 (77-123)||(6758754-6758800)
[»] chr2 (2 HSPs)
chr2 (73-134)||(38176499-38176560)
chr2 (75-134)||(15047299-15047358)
[»] chr1 (4 HSPs)
chr1 (75-134)||(24357545-24357604)
chr1 (75-134)||(24345167-24345226)
chr1 (71-117)||(14123976-14124022)
chr1 (71-100)||(48475590-48475619)
[»] chr7 (2 HSPs)
chr7 (77-131)||(39676732-39676786)
chr7 (71-117)||(35051016-35051062)
[»] chr4 (1 HSPs)
chr4 (71-117)||(20006344-20006390)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 8532373 - 8532012
Alignment:
Q  18 atttgtagtgtgagcaaggttattttag----gaagaatggatatggtactataaacaatttagctcccttcaatccaaatcaagaacattttgctgaag 113  Q
    ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8532373 atttgtagtgtgagcaaggttattttagctaggaagaatggatatggtactataaacaatttagctcccttcaatccaaatcaagaacattttgctgaag 8532274  T
Q  114 taaacaaggtgcatatatagaatttaatgnnnnnnnnnnnnnatttgaaaattaatatcaattggatgccaaaggagttggtggatgaaattaaattatg 213  Q
    |||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8532273 taaacaaggtgcatatatagaatttaatgttgtttgatttttatttgaaaattaatatcaattggatgccaaaggagttggtggatgaaattaaattatg 8532174  T
Q  214 ctacaaatttgttggccttctagtctgctatgttttttcttctctggttttttccaatttaagtccctgcgtttatcttaagtgtggtccaggtattgtc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8532173 ctacaaatttgttggccttctagtctgctatgttttttcttctctggttttttccaatttaagtccctgcgtttatcttaagtgtggtccaggtattgtc 8532074  T
Q  314 tcttattgtatggcaaaacaatgagctagttgtttattgtgtggcaaaatcaaattttaatt 375  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8532073 tcttattgtatggcaaaacaatgagctagttgtttattgtgcggcaaaatcaaattttaatt 8532012  T

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Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 385 - 471
Target Start/End: Complemental strand, 8531952 - 8531866
Alignment:
Q  385 gcactataaccatagagacacaagatgacaggctgctgtttcggtggttttttgaggatgacagtttggtttttctgttttagcctt 471  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8531952 gcacaataaccatagagacacaagatgacaggctgctgtttcggtggttttttgaggatgacagtttggtttttctgttttagcctt 8531866  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 20786809 - 20786750
Alignment:
Q  75 tagctcccttcaatccaaatcaagaacattttgctgaagtaaacaaggtgcatatataga 134  Q
    ||||| ||||||||||||||||||||||||||| | |||||||||||||||| |||||||    
T  20786809 tagcttccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatataga 20786750  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 24184734 - 24184675
Alignment:
Q  75 tagctcccttcaatccaaatcaagaacattttgctgaagtaaacaaggtgcatatataga 134  Q
    ||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |||||||    
T  24184734 tagctcccttcaatccaaatcaagaacatcttggtgaagaaaacaaggtgcaaatataga 24184675  T

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Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 156 - 299
Target Start/End: Original strand, 3383878 - 3384026
Alignment:
Q  156 atttgaaaattaatatcaattggatgccaaaggagttggtggatgaaattaaattatgctacaaatttgttggccttctagtc-----tgctatgttttt 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||    
T  3383878 atttgaaaattaatatcaattggatgccaaaggagttggtggatgaaattaaattatgctacaaatttgttggccttctagtctgctatgctatgttttt 3383977  T
Q  251 tcttctctggttttttccaatttaagtccctgcgtttatcttaagtgtg 299  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3383978 tcttctctagttttttccaatttaagtccctgcgtttatcttaagtgtg 3384026  T

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Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 3383355 - 3383458
Alignment:
Q  18 atttgtagtgtgagcaaggttattttaggaagaatggatatggtactataaacaatttagctcccttcaatccaaatcaagaacattttgctgaagtaaa 117  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  3383355 atttgtcgtgtgagcaaggttattttaggaagaatgaatatggtactataaacaatttagctcccttgaatccaaatcaagaacattttgctaaagtaaa 3383454  T
Q  118 caag 121  Q
    ||||    
T  3383455 caag 3383458  T

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Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 5154315 - 5154401
Alignment:
Q  385 gcactataaccatagagacacaagatgacaggctgctgtttcggtggttttttgaggatgacagtttggtttttctgttttagcctt 471  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5154315 gcacaataaccatagagacacaagatgacaggctgctgtttcggtggtttttttaggatgacagtttggtttttctgttttagcctt 5154401  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 375
Target Start/End: Original strand, 5154183 - 5154255
Alignment:
Q  303 caggtattgtctcttattgtatggcaaaacaatgagctagttgtttattgtgtggcaaaatcaaattttaatt 375  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  5154183 caggtattgtcttttattgtatggcaaaacaatcggctagttgtttattgtgcggcaaaatcaaattttaatt 5154255  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 42632940 - 42632882
Alignment:
Q  73 tttagctcccttcaatccaaatcaagaacattttgctgaagtaaacaaggtgcatatat 131  Q
    |||| |||||||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  42632940 tttaactcccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatat 42632882  T

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Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 303 - 372
Target Start/End: Original strand, 26305404 - 26305473
Alignment:
Q  303 caggtattgtctcttattgtatggcaaaacaatgagctagttgtttattgtgtggcaaaatcaaatttta 372  Q
    |||||||||| ||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||    
T  26305404 caggtattgtttcttattgtatggaaaaataatcagctagttgtttattgtgtggcaaaatcaaatttta 26305473  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 49962433 - 49962494
Alignment:
Q  73 tttagctcccttcaatccaaatcaagaacattttgctgaagtaaacaaggtgcatatataga 134  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||    
T  49962433 tttagctcccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgtaaatataga 49962494  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 26305271 - 26305386
Alignment:
Q  102 attttgctgaagtaaacaaggtgcatatatagaatttaatgnnnnnnnnnnnnnatttgaaaattaatatcaattggatgccaaaggagttggtggatga 201  Q
    ||||||||||||||||||||||||||| ||||| |||||||             |||  ||||||||||| ||| |||||||||||||||||||| | ||    
T  26305271 attttgctgaagtaaacaaggtgcatagatagagtttaatgttgtttgatttttattccaaaattaatattaatgggatgccaaaggagttggtgaaaga 26305370  T
Q  202 aattaaattatgctac 217  Q
    ||||||||||||||||    
T  26305371 aattaaattatgctac 26305386  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 408252 - 408193
Alignment:
Q  75 tagctcccttcaatccaaatcaagaacattttgctgaagtaaacaaggtgcatatataga 134  Q
    ||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |||||||    
T  408252 tagctcccttcaatccaaatcaagaacatcttggtgaagaaaacaaggtgcaaatataga 408193  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 415690 - 415749
Alignment:
Q  75 tagctcccttcaatccaaatcaagaacattttgctgaagtaaacaaggtgcatatataga 134  Q
    ||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |||||||    
T  415690 tagctcccttcaatccaaatcaagaacatcttggtgaagaaaacaaggtgcaaatataga 415749  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 38792617 - 38792558
Alignment:
Q  75 tagctcccttcaatccaaatcaagaacattttgctgaagtaaacaaggtgcatatataga 134  Q
    |||||||||||||||||||| |||| ||| ||| ||||||||||||||| || |||||||    
T  38792617 tagctcccttcaatccaaattaagatcatcttggtgaagtaaacaaggttcaaatataga 38792558  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 6458094 - 6458048
Alignment:
Q  77 gctcccttcaatccaaatcaagaacattttgctgaagtaaacaaggt 123  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||    
T  6458094 gctcccttcaatctaaatcaagaacattttggtcaagtaaacaaggt 6458048  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 6758754 - 6758800
Alignment:
Q  77 gctcccttcaatccaaatcaagaacattttgctgaagtaaacaaggt 123  Q
    ||||| ||||||||||||||||||||||||| | |||||||||||||    
T  6758754 gctcctttcaatccaaatcaagaacattttggtcaagtaaacaaggt 6758800  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 38176560 - 38176499
Alignment:
Q  73 tttagctcccttcaatccaaatcaagaacattttgctgaagtaaacaaggtgcatatataga 134  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||    
T  38176560 tttagctcccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatataga 38176499  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 15047358 - 15047299
Alignment:
Q  75 tagctcccttcaatccaaatcaagaacattttgctgaagtaaacaaggtgcatatataga 134  Q
    ||||| ||||||||||||||||||||||||||| | |||||||||||||||| |||||||    
T  15047358 tagcttccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatataga 15047299  T

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Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 24357545 - 24357604
Alignment:
Q  75 tagctcccttcaatccaaatcaagaacattttgctgaagtaaacaaggtgcatatataga 134  Q
    ||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |||||||    
T  24357545 tagctcccttcaatccaaatcaagaacatcttggtgaagaaaacaaggtgcaaatataga 24357604  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 24345167 - 24345226
Alignment:
Q  75 tagctcccttcaatccaaatcaagaacattttgctgaagtaaacaaggtgcatatataga 134  Q
    |||||||||||||||||||||||||| || ||| ||||| |||||||||||| |||||||    
T  24345167 tagctcccttcaatccaaatcaagaatatcttggtgaagaaaacaaggtgcaaatataga 24345226  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 14123976 - 14124022
Alignment:
Q  71 aatttagctcccttcaatccaaatcaagaacattttgctgaagtaaa 117  Q
    ||||||||||||||||||||||||||| || |||||| |||||||||    
T  14123976 aatttagctcccttcaatccaaatcaaaaatattttgttgaagtaaa 14124022  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 100
Target Start/End: Original strand, 48475590 - 48475619
Alignment:
Q  71 aatttagctcccttcaatccaaatcaagaa 100  Q
    ||||||||||||||||||||||||||||||    
T  48475590 aatttagctcccttcaatccaaatcaagaa 48475619  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 39676786 - 39676732
Alignment:
Q  77 gctcccttcaatccaaatcaagaacattttgctgaagtaaacaaggtgcatatat 131  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  39676786 gctcccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatat 39676732  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 35051016 - 35051062
Alignment:
Q  71 aatttagctcccttcaatccaaatcaagaacattttgctgaagtaaa 117  Q
    ||||||||||||||||||||||||||| || |||||| |||||||||    
T  35051016 aatttagctcccttcaatccaaatcaaaaatattttgttgaagtaaa 35051062  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 20006390 - 20006344
Alignment:
Q  71 aatttagctcccttcaatccaaatcaagaacattttgctgaagtaaa 117  Q
    ||||||||||||||||||||||||||| || |||||| |||||||||    
T  20006390 aatttagctcccttcaatccaaatcaaaaatattttgttgaagtaaa 20006344  T

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