View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20062_high_11 (Length: 309)

Name: NF20062_high_11
Description: NF20062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20062_high_11
NF20062_high_11
[»] chr5 (6 HSPs)
chr5 (13-293)||(15545461-15545738)
chr5 (13-191)||(15528132-15528301)
chr5 (13-139)||(15517754-15517880)
chr5 (13-139)||(15522044-15522170)
chr5 (13-111)||(15550370-15550468)
chr5 (127-212)||(15517649-15517739)


Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 15545738 - 15545461
Alignment:
Q  13 aatatcacaagataacttgaatttggccctgatggtggtggatctgaaagagcactaggattcattttgtacatggaaagaagtctagttgcatacattt 112  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15545738 aatatcacaagataacttgaatttggtcctgatggtggtgggtctgaaagtgcactaggattcattttgtacatggaaagaagtcttgttgcatacattt 15545639  T
Q  113 tctctgatttgtagattaaactatgatcttgaagattaatcaatatatgtttatgaatgtacctgtatcctttatatacttcatatttcttatccatg-t 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15545638 tctctgatttgtagattaaactatgatcttgaagattaatcaatatatgtttatgaatgtacctgtatcctttatatacttcatatttcttatccatgtt 15545539  T
Q  212 tgaactttgaacgttaattaatatggataattctcatttgtgaggcagtgactaattcatgataatgggtgacgtcttctgt 293  Q
    |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15545538 tgaactttgaacg----ttaatatggataattctcatttgtgaggcagtgactaattcatgataatgggtgacgtcttctgt 15545461  T

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Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 15528301 - 15528132
Alignment:
Q  13 aatatcacaagataacttgaatttggccctgatggtggtggatctgaaagagcactaggattcattttgtacatggaaagaagtctagttgcatacattt 112  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  15528301 aatatcacaagataacttgaatttggccccgatggtggtgggtctgaaagagcactaggattctttttgtacatggaaagaagtcttgttgcatacattt 15528202  T
Q  113 tctctgatttgtagattaaactatgatcttgaagattaatcaatatatgtttatgaatgtacctgtatcctttatatac 191  Q
    || ||||||||||||||||| |||||||||||||||         ||||||||||||||||| || |||||||||||||    
T  15528201 tcactgatttgtagattaaattatgatcttgaagat---------tatgtttatgaatgtacgtgaatcctttatatac 15528132  T

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Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 15517880 - 15517754
Alignment:
Q  13 aatatcacaagataacttgaatttggccctgatggtggtggatctgaaagagcactaggattcattttgtacatggaaagaagtctagttgcatacattt 112  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||    
T  15517880 aatatcacaagataacttgaatttggccccgatggtggtgggtctgaaagtgcactaggattctttttgtacatggaaagaagtcttgttgcatacattt 15517781  T
Q  113 tctctgatttgtagattaaactatgat 139  Q
    ||||||||||||| |||||||||||||    
T  15517780 tctctgatttgtaaattaaactatgat 15517754  T

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Target: chr5; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 15522170 - 15522044
Alignment:
Q  13 aatatcacaagataacttgaatttggccctgatggtggtggatctgaaagagcactaggattcattttgtacatggaaagaagtctagttgcatacattt 112  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  15522170 aatatcacaagataacttgaatttggtcctgatggtggtggatctgaaagagcactaggattccttttgtacatggaaagaagtcttgttgcatacattt 15522071  T
Q  113 tctctgatttgtagattaaactatgat 139  Q
    || | ||||| || |||||||||||||    
T  15522070 tcaccgatttataaattaaactatgat 15522044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 15550468 - 15550370
Alignment:
Q  13 aatatcacaagataacttgaatttggccctgatggtggtggatctgaaagagcactaggattcattttgtacatggaaagaagtctagttgcatacatt 111  Q
    ||||| ||||||||||  |||||||| |||||||||||| ||||||||||||||||||| ||| |||| ||||||||||||||||| | ||||||||||    
T  15550468 aatattacaagataaccggaatttggacctgatggtggttgatctgaaagagcactagggttccttttatacatggaaagaagtcttgctgcatacatt 15550370  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 15517739 - 15517649
Alignment:
Q  127 attaaactatgatcttgaagattaatcaatatatgtttatg------aatgtacctgtatcctttatatacttcatatttcttatccatgtt 212  Q
    ||||||| |||||||||||||||||||||||||||||||||      ||||||| ||||||||| |||||||||||||||||||||||||||    
T  15517739 attaaacaatgatcttgaagattaatcaatatatgtttatgtttatgaatgtacgtgtatcctt-atatacttcatatttcttatccatgtt 15517649  T

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