View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20062_high_13 (Length: 272)
Name: NF20062_high_13
Description: NF20062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20062_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 48705365 - 48705608
Alignment:
| Q |
11 |
tagattattctaacattttaaacatcactgtaaaaattcattcgaacatgtgaagggtcttaactttgttaattagtaaattattttctatctgcattca |
110 |
Q |
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| T |
48705365 |
tagattgttctaacattttaaacatcactgtaaaa-ttcattcgaacatgtgaagggtcttaactttgttaattagtgaattattttctatctgcgttca |
48705463 |
T |
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| Q |
111 |
agttcaatgatatgatgcatgtcatatatgtacaatacacataaagatccttatttatttccaaaatggaatatcgttctaacaattcaaagttcatgta |
210 |
Q |
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| T |
48705464 |
agttcaatgatatgatgcatgtcatatatgtacaatacacataaagatccttatttatttccaaaatggaatatcgttctaacaattcaaagttcatgta |
48705563 |
T |
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| Q |
211 |
catcatattctaaatatcaatcaagtaccatcatatactagttca |
255 |
Q |
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| T |
48705564 |
catcatattctaaatatcaatcaagtaccatcatatactagttca |
48705608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 33525617 - 33525713
Alignment:
| Q |
159 |
ccttatttatttccaaaatggaatatcgttctaacaattcaaagttcatgtacatcatattctaaatatcaatcaagtaccatcatatactagttca |
255 |
Q |
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| T |
33525617 |
ccttattcattttcaaaatggaatactgttctcacaattcagagttcatgtacatcatattctaaatatcaattgagtaccatcatatactagttca |
33525713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 33524678 - 33524731
Alignment:
| Q |
11 |
tagattattctaacattttaaacatcactgtaaaaattcattcgaacatgtgaa |
64 |
Q |
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| T |
33524678 |
tagattgttctaatattttaaacatcattgtaaaaattcattcaaacatgtgaa |
33524731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 33525542 - 33525608
Alignment:
| Q |
64 |
agggtcttaactttgttaattagtaaattattttctatctgcattcaagttcaatgatatgatgcat |
130 |
Q |
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| T |
33525542 |
agggtcttaactttctcaattcataaattattttctatccacatacaagttcaattatatgatgcat |
33525608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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