View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20062_high_17 (Length: 240)

Name: NF20062_high_17
Description: NF20062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20062_high_17
NF20062_high_17
[»] chr7 (1 HSPs)
chr7 (34-200)||(9238024-9238191)
[»] chr6 (5 HSPs)
chr6 (34-200)||(14415928-14416096)
chr6 (34-173)||(14322946-14323086)
chr6 (34-205)||(11946717-11946887)
chr6 (59-203)||(14666695-14666841)
chr6 (138-191)||(17715760-17715813)
[»] chr8 (2 HSPs)
chr8 (34-190)||(28244677-28244834)
chr8 (152-189)||(45349374-45349411)
[»] scaffold0832 (1 HSPs)
scaffold0832 (34-200)||(4-172)
[»] chr3 (2 HSPs)
chr3 (34-193)||(13852150-13852307)
chr3 (59-204)||(1658664-1658811)
[»] scaffold0838 (1 HSPs)
scaffold0838 (34-173)||(1-141)
[»] chr5 (2 HSPs)
chr5 (59-189)||(31406255-31406386)
chr5 (59-204)||(24047019-24047167)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 9238024 - 9238191
Alignment:
Q  34 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaatttttggtcaacaatagtcaaaataaaataaataagaaaagtatta 133  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  9238024 tacaagtattaaaagagtaacaagtacccatttattattcattcacgtgttaaattttttgtcaacaatagtcaaaataaaataaataaaaaaagtatta 9238123  T
Q  134 taaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcaca-agatctca 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9238124 taaactattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacagagatctca 9238191  T

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Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 14416096 - 14415928
Alignment:
Q  34 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaattttt-ggtcaacaatagtcaaaataaaataaataagaaaagtatt 132  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  14416096 tacaagtattaaaagagtaacaagtacccattcattattcattcacgtgttaaattttttggtcaacaatagtcaaaataaaataaataaaaaaagtatt 14415997  T
Q  133 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcaca-agatctca 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14415996 ataaacaattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacagagatctca 14415928  T

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Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 14323086 - 14322946
Alignment:
Q  34 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaattttt-ggtcaacaatagtcaaaataaaataaataagaaaagtatt 132  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  14323086 tacaagtattaaaagagtaacaagtacccattcattattcattcacgtgttaaattttttggtcaacaatagtcaaaataaaataaataaaaaaagtatt 14322987  T
Q  133 ataaaccattgagaaacacttttctctctcttccctcaaaa 173  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  14322986 ataaacaattgagaaacacttttctctctcttccctcaaaa 14322946  T

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Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 34 - 205
Target Start/End: Original strand, 11946717 - 11946887
Alignment:
Q  34 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaatttt-tggtcaacaatagtcaaaataaaataaataagaaaagtatt 132  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||    
T  11946717 tacaagtattaaaagagtaacaagtacc-attcattattcattcacgtgttaaattttttggtcaacaatagtcaaaataaaataaataaataaagtatt 11946815  T
Q  133 ataaacca-ttgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacaagatctcaattcc 205  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||  | |||||||||||||    
T  11946816 ataaaccatttgagaaacacttttctctctcttccctcaaaaatcacctttctctct--cgagatctcaattcc 11946887  T

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Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 14666695 - 14666841
Alignment:
Q  59 acccattgtttattcattcacgtgttaaat-ttttggtcaacaatagtcaaaataaaataaataagaaaagtattataaaccattgagaaacacttttct 157  Q
    |||||||  ||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||| |||||| |||||| ||||| ||||||||||||||    
T  14666695 acccattcattattcattcacgtgttaaaaattttagtcaacaatagtcaaaataaaataagtaaaaaaagtgttataagccattcagaaacacttttct 14666794  T
Q  158 ctctcttccctcaaaaatcacttttctctctca-caagatctcaatt 203  Q
    ||||||| ||| ||||||||||||||||||||| | |||||||||||    
T  14666795 ctctcttacctaaaaaatcacttttctctctcaccgagatctcaatt 14666841  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 17715760 - 17715813
Alignment:
Q  138 ccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcac 191  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  17715760 ccattgagaaacacttttctctctcttccgtcaaaaatctcttttctctctcac 17715813  T

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Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 28244677 - 28244834
Alignment:
Q  34 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaatttt-tggtcaacaatagtcaaaataaaataaataagaaaagtatt 132  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||    
T  28244677 tacaagtattaaaagagtaacaagtacccattcattattcattcacgtgttaaattttttggtcaacaataatcaaaataaaataaataaaaaaagtatt 28244776  T
Q  133 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctca 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28244777 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctca 28244834  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 45349374 - 45349411
Alignment:
Q  152 ttttctctctcttccctcaaaaatcacttttctctctc 189  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45349374 ttttctctctcttccctcaaaaatcacttttctctctc 45349411  T

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Target: scaffold0832 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 172 - 4
Alignment:
Q  34 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaattttt-ggtcaacaatagtcaaaataaaataaataagaaaagtatt 132  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  172 tacaagtattaaaagagtaacaagtacccattcattattcattcaagtgttaaattttttggtcaacaatagtcaaaataaaataaataaaaaaagtatt 73  T
Q  133 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcaca-agatctca 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  72 ataaacaattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacagagatctca 4  T

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Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 34 - 193
Target Start/End: Complemental strand, 13852307 - 13852150
Alignment:
Q  34 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaattttt-ggtcaacaatagtcaaaataaaataaataagaaaagtatt 132  Q
    |||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||   |||||||    
T  13852307 tacaagtattaaaagagtaacaagtaccgattcattattcattcacgtgttaaattttttggtcaacaatagtcaaaataaaacaaaaaa---aagtatt 13852211  T
Q  133 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacaa 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13852210 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacaa 13852150  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 59 - 204
Target Start/End: Complemental strand, 1658811 - 1658664
Alignment:
Q  59 acccattgtttattcattcacgtgttaaatt-tttggtcaacaatagtcaaaataaaataaataagaaaagtattataaaccattgagaaacacttttct 157  Q
    |||||||  |||||||||||| |||||||   ||| |||||||||||||||||||||| || ||| |||||| |||||| | ||||||||||||||||||    
T  1658811 acccattcattattcattcacatgttaaaaaatttagtcaacaatagtcaaaataaaaaaagtaaaaaaagtgttataagcaattgagaaacacttttct 1658712  T
Q  158 ctctcttccctcaaaaatcacttttctctctca-caagatctcaattc 204  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  1658711 ctctcttccctcaaaaatcacttttctctctcaccgagatctcaattc 1658664  T

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Target: scaffold0838 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 141 - 1
Alignment:
Q  34 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaattttt-ggtcaacaatagtcaaaataaaataaataagaaaagtatt 132  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  141 tacaagtattaaaagagtaacaagtacccattcattattcattcaagtgttaaattttttggtcaacaatagtcaaaataaaataaataaaaaaagtatt 42  T
Q  133 ataaaccattgagaaacacttttctctctcttccctcaaaa 173  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  41 ataaacaattgagaaacacttttctctctcttccctcaaaa 1  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 31406255 - 31406386
Alignment:
Q  59 acccattgtttattcattcacgtgttaaat-ttttggtcaacaatagtcaaaataaaataaataagaaaagtattataaaccattgagaaacacttttct 157  Q
    |||||||  ||||||||||||||||||||  |||| ||||||||||||||||| ||||||  ||| |||||| ||||||  |||||||||||||||||||    
T  31406255 acccattcattattcattcacgtgttaaaaattttagtcaacaatagtcaaaacaaaataggtaaaaaaagtgttataagacattgagaaacacttttct 31406354  T
Q  158 ctctcttccctcaaaaatcacttttctctctc 189  Q
    ||||||||||||||||| ||||||||||||||    
T  31406355 ctctcttccctcaaaaaacacttttctctctc 31406386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 59 - 204
Target Start/End: Complemental strand, 24047167 - 24047019
Alignment:
Q  59 acccattgtttattcattcacgtgttaaat-ttttggtcaacaatagtcaaaataaaataaataagaaaa-gtattataaaccattgagaaacacttttc 156  Q
    |||||||  ||||| ||||||||||||||  |||| || ||||||||||||| |||||||| ||| |||| || |||||| | |||||||||||||||||    
T  24047167 acccattcattatttattcacgtgttaaaaattttagttaacaatagtcaaattaaaataagtaaaaaaatgtgttataagctattgagaaacacttttc 24047068  T
Q  157 tctctcttccctcaaaaatcacttttctctctca-caagatctcaattc 204  Q
    |||||||||||||||||||||||||||||||| | | ||||||||||||    
T  24047067 tctctcttccctcaaaaatcacttttctctcttaccgagatctcaattc 24047019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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