View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20062_high_3 (Length: 484)
Name: NF20062_high_3
Description: NF20062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20062_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 8 - 468
Target Start/End: Complemental strand, 40049108 - 40048636
Alignment:
| Q |
8 |
cgaataatatcacaagccaatttttgtccnnnnnnngtttatcttacaggtcagttatacattttctataacctctatactgttgattccaactacattt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40049108 |
cgaataatatcacaagccaatttttgtccaaaaaaagtttatcttacaggtcagttatacattttctataacctctatactgttgattccaactacattt |
40049009 |
T |
|
| Q |
108 |
attgcaatatgatttgagaaacaataatattaatctcatttcaaagttaacggctcaccacataaaaacttcacacaataattcaagtaaccaaaagaga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40049008 |
attgcaatatgatttgagaaacaataatattaatctcatttcaaagttaacgggtcaccacataaaaacttcacacgataattcaagtaaccaaaagaga |
40048909 |
T |
|
| Q |
208 |
tgcaatgccaataataataa------------gataaaatatccttattcaccatgacagattattgattccaccaaaatcacaactatagaactataac |
295 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40048908 |
tgcaataccaataataataataataataataagataaaatatccttattcaccatgacagattattgattccaccaaaatcacaactatagaactataac |
40048809 |
T |
|
| Q |
296 |
attacacctacccatcatttcattggtctctatataaaaccacctctcattactctccaatcaacacatccaacatacaaattaacaaaaaatccaatca |
395 |
Q |
| |
|
||||||||||||||||||||| |||| ||| ||||||| ||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40048808 |
attacacctacccatcatttccttggcctcaatataaatccacctctccttgccatccaatcaacacatccaacatacaaattaacaaaaaatccaatca |
40048709 |
T |
|
| Q |
396 |
tttacgttcctccacaatcttcaatcatcaagccaaatatgaatcaaattatcttttccttctcactctttct |
468 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40048708 |
tttacattcctccacaatcttcaatcatcaagccaaatatgaatcaaattatcttttccttctcactctttct |
40048636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University