View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20062_high_5 (Length: 407)
Name: NF20062_high_5
Description: NF20062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20062_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 33 - 305
Target Start/End: Complemental strand, 19010496 - 19010224
Alignment:
| Q |
33 |
ataattgtatgattcttaccgagtgtgtcaccagccttgaatgtttttcctgctggccaattttgaacaccaaaggaccaacctttcccatcaccaacaa |
132 |
Q |
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| T |
19010496 |
ataattgtatgattcttaccgagtgtgtcaccagccttgaatgtttttcctgcaggccaattttgaacaccaaaggaccaacctttcccatcaccaacaa |
19010397 |
T |
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| Q |
133 |
tgtgttcttctgcaaaactcatgttagaatgaaataccaacatacataatagtgacattagaataatacttgtgctactgactcttccctgatccatgat |
232 |
Q |
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| T |
19010396 |
tgtgttcttctgcaaaactcatgttagaatgaaataccaacatacataatagtgacattagaataatacttgtgctactgactcttccctgatccatgat |
19010297 |
T |
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| Q |
233 |
aaacttttagtgatttagctaactagcactggttaattaattttggatgctcacaatagagaattgagagatg |
305 |
Q |
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| T |
19010296 |
aaagttttagtgattaagctaactagcactggttaattaattttggatgctcacaatagagaattgagagatg |
19010224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 47 - 313
Target Start/End: Complemental strand, 19032368 - 19032102
Alignment:
| Q |
47 |
cttaccgagtgtgtcaccagccttgaatgtttttcctgctggccaattttgaacaccaaaggaccaacctttcccatcaccaacaatgtgttcttctgca |
146 |
Q |
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| T |
19032368 |
cttaccgagtatgtcaccttccttgaaagtttttcccaaagtccaattttgaacatgaaaggaccaacctttcccatcaccaacaatgtattcagctgca |
19032269 |
T |
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| Q |
147 |
aaactcatgttagaatgaaataccaacatacataatagtgacattagaataatacttgtgctactgactcttccctgatccatgataaacttttagtgat |
246 |
Q |
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| T |
19032268 |
aaactcatgttagaatgaaataccaagatacataatagtgacattagaataatacttgtgttactgactcttccctgatccatgataaacttttagtgat |
19032169 |
T |
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| Q |
247 |
ttagctaactagcactggttaattaattttggatgctcacaatagagaattgagagatggttttata |
313 |
Q |
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| T |
19032168 |
tcaactaactagcactggttaattaattttgggtgctcataatagacaactgagagatggttttata |
19032102 |
T |
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