View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20062_low_1 (Length: 822)
Name: NF20062_low_1
Description: NF20062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20062_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 672; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 1 - 804
Target Start/End: Original strand, 17584607 - 17585412
Alignment:
| Q |
1 |
aaagcagtatatgcacagctcatcaggaggagccgtcgcattagtgcatttaaaggaatctatggaaaggctaaaattagctagccgattagcacaatgg |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17584607 |
aaagtagtatatgcacagctcatcaggaggagccgtcacattagtgcatttaaaggaatctatggaaaggctaaaattagctagccgattagcacaacgg |
17584706 |
T |
|
| Q |
101 |
ttttcttccttcaagtatgacagaactgaacatgccaatataaagccaaaagacgttgaatgtgccgcattgaagtaggaaccaccaccctaaattttca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17584707 |
ttttcttccttcaagtatgacagaactgaacatgccaatataaagccaaaagatgttgaatgtgccgcattgaagtaggaaccaccaccctaaattttca |
17584806 |
T |
|
| Q |
201 |
attatctgtaaccatgtctaaaagaattttagagtccttgggttggatattacggtgaagcgattgagtagagcaactattgattacttttgagaaattc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17584807 |
attatctgtaaccatgtctaaaagaattttagagtccttgggttggatattacggtgaagcaattgagtagagcaactattgattacttttgagaaattc |
17584906 |
T |
|
| Q |
301 |
tggattgtcaaaacatgtacaac--atattctagaaatccatatttttgctttgtttttagaaagagattagaagctaagtgtgtctcctaaaacttcat |
398 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17584907 |
tggattgtcaaaacatgtacaacatatattctagaaatccatatttttgctttgtttttaaaaagagattagaagctaagtgtgtctcctaaaacttcat |
17585006 |
T |
|
| Q |
399 |
gaattccatccgatccccgactcttgtattgcccatttaccaatcatgatttgtctcattaannnnnnnnnnnnnnnnggctggcaggcatagctgatgg |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17585007 |
gaattccatccgatccccgactcttgtattgcccatttaccaatcatgatttgtctcattaattttgtttttatttttggctggcaggcatagctgatgg |
17585106 |
T |
|
| Q |
499 |
ctgatacaatctcatcaccagatttacctaagatcaaaaaacataatgctggtgacatgaaagatatgataagcaacatgcctgatgccattcttcatta |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17585107 |
ctgatacaatctcatcaccagatttacctaagatcaaaaaacataatgctggtgacatgaaagatatgataagcaacatgcctgatgccattcttcatta |
17585206 |
T |
|
| Q |
599 |
tattctttctttactctcaaccaaagaggcggttagaacttcaatattatcaccaaagtggagatacttgtggactcaattatctg-ctttgaatttaaa |
697 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
17585207 |
tattctttctttactctcaaccaaagaggcggttagaacttcaatcttatcaccaaagtggagatactcgtggactcaattatctgtctttgaatttaaa |
17585306 |
T |
|
| Q |
698 |
attccttatcctctttatgagtcaaatctcaaaaatgaggactcagctaactgcctcttggatcttgtggaaagactactacacaaatccaatcacatag |
797 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
17585307 |
attcctcatcctctttatgagtcaaatcttgaaaatgaggactta-ttaactgcctcttagatcttgtggaaagactactacacaaatccaatcacgtag |
17585405 |
T |
|
| Q |
798 |
aaaggct |
804 |
Q |
| |
|
||||||| |
|
|
| T |
17585406 |
aaaggct |
17585412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 682
Target Start/End: Original strand, 17594017 - 17594110
Alignment:
| Q |
589 |
ttcttcattatattctttctttactctcaaccaaagaggcggttagaacttcaatattatcaccaaagtggagatacttgtggactcaattatc |
682 |
Q |
| |
|
|||||| | ||||||||||||||||| | || ||||| || || |||||||| |||||| | ||||||||| |||||||||||| || ||||| |
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|
| T |
17594017 |
ttcttcttcatattctttctttactccctactaaagatgctgtaagaacttccatattagctacaaagtggaaatacttgtggacacatttatc |
17594110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 471; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 205 - 804
Target Start/End: Complemental strand, 14741386 - 14740791
Alignment:
| Q |
205 |
tctgtaaccatgtctaaaagaattttagagtccttgggttggatattacggtgaagcgattgagtagagcaactattgattacttttgagaaattctgga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14741386 |
tctgtaaccatgtctaaaagaattttagagtccttgagttggatattacggtgaagcgattgagtagagcaactattgattacttttgagaaattctgga |
14741287 |
T |
|
| Q |
305 |
ttgtcaaaacatgta-caacatat--tctagaaatccatatttttgctttgtttttagaaagagattagaagctaagtgtgtctcctaaaacttcatgaa |
401 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14741286 |
ttgtcaaaacatgtaacaacatatattctagaaatccatatttttgctttgtttttaaaaagagattagaagctaagtgtgtctcctaaaacttcatgaa |
14741187 |
T |
|
| Q |
402 |
ttccatccgatccccgactcttgtattgcccatttaccaatcatgatttgtctcattaannnnnnnnnnnnnnnnggctggcaggcatagctgatggctg |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
14741186 |
ttccatccgatccccgactcttgtattgcccatttaccaatcatgatttgtctcattaattttgtttttatttttggctggcaggcatagctgatggctg |
14741087 |
T |
|
| Q |
502 |
atacaatctcatcaccagatttacctaagatcaaaaaacataatgctggtgacatgaaagatatgataagcaacatgcctgatgccattcttcattatat |
601 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14741086 |
atacaatctcattaccagatttacctaagatcaaaaaacataatgctggtgacatgaaagatatgataagcaacatgcctgatgccattcttcattatat |
14740987 |
T |
|
| Q |
602 |
tctttctttactctcaaccaaagaggcggttagaacttcaatattatcaccaaagtggagatacttgtggactcaattatctg-ctttgaatttaaaatt |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
14740986 |
tctttctttactctcaaccaaagaggcggttagaacttcaatattatcaccaaagtggagatacttgtggactcaattatctgtctttgaatttaaaatt |
14740887 |
T |
|
| Q |
701 |
ccttatcctctttatgagtcaaatctcaaaaatgaggactcagctaactgcctcttggatcttgtggaaagactactacacaaatccaatcacatagaaa |
800 |
Q |
| |
|
|||||||||||| ||| | | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14740886 |
ccttatcctctt--tgaat------ttaaaaatgaggactcagctaactgcctcttagatcttgtggaaagactactacacaaatccaatcacatagaaa |
14740795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 14742471 - 14742262
Alignment:
| Q |
1 |
aaagcagtatatgcacagctcatcaggaggagccgtcgcattagtgcatttaaaggaatctatggaaaggctaaaattagctagccgattagcacaatgg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
14742471 |
aaagtagtatatgcacagctcatcaggaggagccgtcgcattagtgcatttaaaggaatctatggaaaggctaaaatttgctagccgattagcacaacgg |
14742372 |
T |
|
| Q |
101 |
ttttcttccttcaagtatgacagaactgaacatgccaatataaagccaaaagacgttgaatgtgccgcattgaagtaggaaccaccaccctaaattttca |
200 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14742371 |
ttttcgtccttcaa----gacagaactgaacatgccaatataaagccaaaagacattgaatgtgccgcattgaagtaggaaccaccaccctaaattttca |
14742276 |
T |
|
| Q |
201 |
attatctgtaacca |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14742275 |
attatctgtaacca |
14742262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 682
Target Start/End: Complemental strand, 14729470 - 14729377
Alignment:
| Q |
589 |
ttcttcattatattctttctttactctcaaccaaagaggcggttagaacttcaatattatcaccaaagtggagatacttgtggactcaattatc |
682 |
Q |
| |
|
|||||| | ||||||||||||||||| | || ||||| || || |||||||| |||||| | ||||||||| |||||||||||| || ||||| |
|
|
| T |
14729470 |
ttcttcttcatattctttctttactccctactaaagatgctgtaagaacttccatattagctacaaagtggaaatacttgtggacacatttatc |
14729377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 38929841 - 38929922
Alignment:
| Q |
67 |
aaggctaaaattagctagccgattagcacaatggttt-tcttccttcaagtatgacagaactgaacatgccaatataaagcc |
147 |
Q |
| |
|
|||||||||||||| ||||| || ||||||| |||| | ||||| |||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
38929841 |
aaggctaaaattagttagccaatcagcacaacagtttcttttcctccaagtatgacgaaactgaacatgtcaatctaaagcc |
38929922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 482 - 680
Target Start/End: Complemental strand, 31219350 - 31219152
Alignment:
| Q |
482 |
gcaggcatagctgatggctgatacaatctcatcaccagatttacctaagatcaaaaaacataatgctggt-gacatgaaagatatgataagcaacatgcc |
580 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||| || ||| || |||| || ||| | || || |||| || |||||||||||||| ||| | | || |
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|
| T |
31219350 |
gcaggcatagctcatggcttctacaatctcatcatcaaattcacataagctccaaagatatcata-tggtcgatatgaaagatatgattagcgatttacc |
31219252 |
T |
|
| Q |
581 |
tgatgccattcttcattatattctttctttactctcaaccaaagaggcggttagaacttcaatattatcaccaaagtggagatacttgtggactcaatta |
680 |
Q |
| |
|
||| | |||||| |||||||||||||| ||||| || ||||||| || |||||||| |||||| || |||||||||||||||||||||| |||||| |
|
|
| T |
31219251 |
tgagggaattctttattatattctttctcgcctctctacggaagaggctgtaagaacttctatattagcaacaaagtggagatacttgtggacccaatta |
31219152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 505 - 602
Target Start/End: Original strand, 31001158 - 31001255
Alignment:
| Q |
505 |
caatctcatcaccagatttacctaagatcaaaaaacataatgctggtgacatgaaagatatgataagcaacatgcctgatgccattcttcattatatt |
602 |
Q |
| |
|
|||| |||||||||||| | | |||||| ||| | |||||| ||||||||||||||||| |||||| || ||| ||| |||||||||||||||||| |
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|
| T |
31001158 |
caatgtcatcaccagatgtgcataagattgaaagatataatgaaggtgacatgaaagatataataagcgacttgcgtgacgccattcttcattatatt |
31001255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 682
Target Start/End: Complemental strand, 40451759 - 40451664
Alignment:
| Q |
587 |
cattcttcattatattctttctttactctcaaccaaagaggcggttagaacttcaatattatcaccaaagtggagatacttgtggactcaattatc |
682 |
Q |
| |
|
||||||||| |||||||||| || ||||| ||||| || || || | ||| || |||||| || |||||||||| ||||||||||| |||||||| |
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|
| T |
40451759 |
cattcttcaccatattctttcatttctctccaccaaggatgctgtcaaaacatccatattagcaacaaagtggaggtacttgtggacccaattatc |
40451664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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