View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20062_low_10 (Length: 348)
Name: NF20062_low_10
Description: NF20062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20062_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 14904798 - 14904480
Alignment:
| Q |
15 |
aacagaactgacatatatgttagaaagaatgtgcacctattttgtccaagcttactgtttcaaaaagttgaattgcaagattttgagaaccacactgatg |
114 |
Q |
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| T |
14904798 |
aacagaactgacatttatgttagaaagaatgtgcacctattttgtccaagcttactgtctcaaaaagttgaattgcaagattttgagaaccacgctgatg |
14904699 |
T |
|
| Q |
115 |
ataaagagaaacaagctgaagaaaaagcacacattcagtatataactgcaaatatattcggttaggcaacagcattgttgaagaattagagcagataact |
214 |
Q |
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| T |
14904698 |
ataaagagaaacaagctgaagaaaaagcacacattcagtatataactgcaaatgtattcggttaggcatcaacattgttgaagaattagagcagataact |
14904599 |
T |
|
| Q |
215 |
ctatgtcttcattttcccttgtttgttttataccaagttaagatctaacatgaagtcattccagacacatattggttttcacagccttcagtgctaggtc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14904598 |
ctatgtcttcattttcccttgtttgttttataccaagttaagatctaacatgaagtcattccagacacatattggttttcacagccttcagtgctaggtc |
14904499 |
T |
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| Q |
315 |
gtaaaatagtagtcgtttt |
333 |
Q |
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|||| |||||||||||||| |
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| T |
14904498 |
gtaacatagtagtcgtttt |
14904480 |
T |
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