View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20062_low_15 (Length: 267)

Name: NF20062_low_15
Description: NF20062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20062_low_15
NF20062_low_15
[»] chr8 (8 HSPs)
chr8 (18-254)||(26592114-26592347)
chr8 (20-227)||(25865648-25865855)
chr8 (20-227)||(41943892-41944099)
chr8 (98-201)||(43479673-43479776)
chr8 (20-201)||(38799443-38799624)
chr8 (20-201)||(38821893-38822074)
chr8 (101-198)||(44343984-44344081)
chr8 (149-201)||(38807073-38807125)
[»] chr4 (4 HSPs)
chr4 (20-237)||(34748703-34748920)
chr4 (20-195)||(24860494-24860669)
chr4 (96-225)||(40045368-40045497)
chr4 (116-227)||(40036080-40036191)
[»] chr5 (4 HSPs)
chr5 (20-202)||(12546997-12547179)
chr5 (20-195)||(12531440-12531615)
chr5 (116-189)||(9866668-9866741)
chr5 (113-193)||(9870022-9870102)
[»] chr7 (2 HSPs)
chr7 (20-201)||(21317522-21317703)
chr7 (32-201)||(3929960-3930129)
[»] chr2 (5 HSPs)
chr2 (32-201)||(13576308-13576477)
chr2 (20-227)||(34571419-34571626)
chr2 (101-216)||(34562636-34562751)
chr2 (20-60)||(34579054-34579094)
chr2 (20-60)||(34584803-34584843)
[»] scaffold0197 (1 HSPs)
scaffold0197 (20-201)||(30959-31140)
[»] chr1 (1 HSPs)
chr1 (101-227)||(7594104-7594230)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 26592114 - 26592347
Alignment:
Q  18 ctttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggctta 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26592114 ctttccagcgtcttgttcgtgagattgctcaggatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggctta 26592213  T
Q  118 tcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtatccgtggc 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26592214 tcttgttggattgtttgaggatactaacctctgcgctattcatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtatccgtggc 26592313  T
Q  218 gagcgtgcttgatcttgttgttgttcgtgagttgtga 254  Q
    ||||||||||||||   ||||||||||||||||||||    
T  26592314 gagcgtgcttgatc---ttgttgttcgtgagttgtga 26592347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 25865648 - 25865855
Alignment:
Q  20 ttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatc 119  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||||  | ||||||||   ||||||    || || || ||||| || ||||||||||    
T  25865648 ttccagcgtcttgttcgtgaaattgctcaggatttcaaaacggatctgagatttcagagtcatgctgttcttgcacttcaggaagctgctgaggcttatc 25865747  T
Q  120 ttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtatccgtggcga 219  Q
    |||| ||||||||||||||||||||  | || || || ||||||||| | || || || ||||| |||||||||||||||||| | ||||| ||||| ||    
T  25865748 ttgtgggattgtttgaggatactaatttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatattcagcttgctcgtcgtattcgtggtga 25865847  T
Q  220 gcgtgctt 227  Q
     |||||||    
T  25865848 acgtgctt 25865855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 41943892 - 41944099
Alignment:
Q  20 ttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatc 119  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||| | || ||||||  ||||||    || || || ||||| || || |||||||    
T  41943892 ttccaacgtcttgttcgtgaaattgctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaagcttatc 41943991  T
Q  120 ttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtatccgtggcga 219  Q
    | |||||||||||||||||||| ||  | || || || ||||||||| | ||||| || ||||| ||||| ||||| |||||  | ||||| ||||| ||    
T  41943992 tggttggattgtttgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattcaacttgcacgccgtattcgtggtga 41944091  T
Q  220 gcgtgctt 227  Q
     |||||||    
T  41944092 acgtgctt 41944099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 201
Target Start/End: Complemental strand, 43479776 - 43479673
Alignment:
Q  98 caagaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagc 197  Q
    |||||||| || || |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||| | ||||| || ||||||||||||||||| |    
T  43479776 caagaagccgctgaagcttatcttgttggtttgtttgaagatactaacctttgcgctattcatgctaagagggttacaattatgcctaaggatattcaac 43479677  T
Q  198 ttgc 201  Q
    ||||    
T  43479676 ttgc 43479673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 38799443 - 38799624
Alignment:
Q  20 ttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatc 119  Q
    ||||| |||||||||||||| |||||||||||||||||||| |||||  | || ||||||   || || || || || |||||||| || || |||||      
T  38799443 ttccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttact 38799542  T
Q  120 ttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgc 201  Q
    | |||||  | ||||| || || ||||| || || || ||||||||| | ||||| |||||||||||||| |||||||||||    
T  38799543 tggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattcagcttgc 38799624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 38822074 - 38821893
Alignment:
Q  20 ttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatc 119  Q
    ||||| |||||||||||||| |||||||||||||||||||| |||||  | || ||||||   || || || || || |||||||| || || |||||      
T  38822074 ttccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttact 38821975  T
Q  120 ttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgc 201  Q
    | |||||  | ||||| || || ||||| || || || ||||||||| | ||||| |||||||||||||| |||||||||||    
T  38821974 tggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattcagcttgc 38821893  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 44343984 - 44344081
Alignment:
Q  101 gaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagct 198  Q
    ||||| || ||||||||||| || ||||||||||||||||| ||  | || ||||| ||||||||| | || || || ||||| ||||||||||||||    
T  44343984 gaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatattcagct 44344081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 38807073 - 38807125
Alignment:
Q  149 tgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgc 201  Q
    ||||| || ||||||||| | |||||||||||||||||||| ||||| |||||    
T  38807073 tgcgcaattcatgctaagagagttactatcatgcctaaggacattcaacttgc 38807125  T

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Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 34748703 - 34748920
Alignment:
Q  20 ttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatc 119  Q
    ||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||    
T  34748703 ttccagcgtctggttcgtgagatcgctcaggatttcaagactgatctccgtttccagagctccgccgtgtcggcgctgcaagaagcggctgaggcttatc 34748802  T
Q  120 ttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtatccgtggcga 219  Q
    | |||||  | |||||||||||||||||||| || || ||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||    
T  34748803 tcgttggtctctttgaggatactaacctctgtgccattcatgccaagcgtgtcactatcatgcctaaggatatccagctcgctaggcgtatccgtggcga 34748902  T
Q  220 gcgtgcttgatcttgttg 237  Q
    ||||||||||||||||||    
T  34748903 gcgtgcttgatcttgttg 34748920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 24860494 - 24860669
Alignment:
Q  20 ttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatc 119  Q
    ||||| ||||| |||||||| || |||||||||||||| || ||||||||||| |||||    ||||| || || || |||||||| || || |||||||    
T  24860494 ttccaacgtctcgttcgtgaaatcgctcaagatttcaaaaccgatctccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaagcttatc 24860593  T
Q  120 ttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattca 195  Q
    | |||||| | ||||| ||||| || || |||||||| ||||||||| | ||||| || ||||| |||||||||||    
T  24860594 tcgttggactctttgaagatacaaatctttgcgctattcatgctaagagagttaccattatgcccaaggatattca 24860669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 225
Target Start/End: Original strand, 40045368 - 40045497
Alignment:
Q  96 tgcaagaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattca 195  Q
    ||||||| || || ||||| |||||||||||  | |||||||| |||||| | |||||||||||||| ||||| |||||||| ||||| ||||| || ||    
T  40045368 tgcaagaggctgctgaggcatatcttgttggtctctttgaggacactaacttgtgcgctatccatgccaagcgagttactattatgcccaaggacatcca 40045467  T
Q  196 gcttgctaggcgtatccgtggcgagcgtgc 225  Q
    | | || ||| | |||||||||||||||||    
T  40045468 gttggcaaggaggatccgtggcgagcgtgc 40045497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 40036080 - 40036191
Alignment:
Q  116 tatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtatccgtg 215  Q
    |||||||||||  | |||||||| |||||| | || ||||||||||| ||||| |||||||| ||||| ||||| || ||| | || ||| | |||||||    
T  40036080 tatcttgttggtctctttgaggacactaacttgtgtgctatccatgccaagcgagttactattatgcccaaggacatccagttggcaaggaggatccgtg 40036179  T
Q  216 gcgagcgtgctt 227  Q
    | ||||| ||||    
T  40036180 gtgagcgcgctt 40036191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 12547179 - 12546997
Alignment:
Q  20 ttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatc 119  Q
    |||||| | ||||||||||| || |||||||||||||| || |||||||| || || |||  |||||| || || || |||||||| || || |||||||    
T  12547179 ttccagaggcttgttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatc 12547080  T
Q  120 ttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgct 202  Q
    ||||||| |||||||| |||||||| ||||| || || ||||||||| | |||||||||||||||||||||||||| ||||||    
T  12547079 ttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaacttgct 12546997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 12531440 - 12531615
Alignment:
Q  20 ttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatc 119  Q
    |||||| | ||||||||||| || |||||||||||||| || |||||||| || || |||  |||||| || || || |||||||| || || |||||||    
T  12531440 ttccagaggcttgttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatc 12531539  T
Q  120 ttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattca 195  Q
    ||||||| |||||||| |||||||| ||||| || || ||||||||| | ||||||||||||||||||||||||||    
T  12531540 ttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattca 12531615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 9866741 - 9866668
Alignment:
Q  116 tatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaagga 189  Q
    ||||||||||| |||||||| ||||||||||| || ||||| ||||||||| | |||||||| |||||| ||||    
T  9866741 tatcttgttggtttgtttgaagatactaacctttgtgctattcatgctaagagagttactattatgcctgagga 9866668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 9870022 - 9870102
Alignment:
Q  113 gcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatatt 193  Q
    |||||| ||||||| |||||| | |||| ||| || |||||||| ||||||||| | |||||||| |||||||||||||||    
T  9870022 gcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcctaaggatatt 9870102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 21317522 - 21317703
Alignment:
Q  20 ttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatc 119  Q
    ||||| |||||||||||||| || ||||| |||||||| || |||||| | || ||||||  |||||| || || || ||||||||||| || |||||||    
T  21317522 ttccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagcggctgaagcttatc 21317621  T
Q  120 ttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgc 201  Q
    ||||||| |||||||| ||||| || || |||||||| ||||||||| | |||||||| ||||||||||||||||| |||||    
T  21317622 ttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgc 21317703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 201
Target Start/End: Complemental strand, 3930129 - 3929960
Alignment:
Q  32 gttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttgttggattgt 131  Q
    |||||||| || ||||| |||||||| || ||||| || ||||||||   |||||| || || || |||||||| || || || ||||||||||| ||||    
T  3930129 gttcgtgaaatcgctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaagcgtatcttgttggtttgt 3930030  T
Q  132 ttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgc 201  Q
    |||| ||||| || || || || || ||||||||| | |||||||| ||||| ||||||||||| |||||    
T  3930029 ttgaagatacgaatctttgtgccattcatgctaagagagttactattatgccgaaggatattcaacttgc 3929960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 201
Target Start/End: Original strand, 13576308 - 13576477
Alignment:
Q  32 gttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttgttggattgt 131  Q
    ||||| || |||||||| |||||||| ||||||||||||||||| |||  |||||| || || || |||||||| || || |||||||||||||| ||||    
T  13576308 gttcgagaaattgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgt 13576407  T
Q  132 ttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgc 201  Q
    |||||||||| || || || ||||| ||||||||| | |||||||| ||||||||||||||||| |||||    
T  13576408 ttgaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggatattcaacttgc 13576477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 34571626 - 34571419
Alignment:
Q  20 ttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatc 119  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| | || || ||||||  ||| ||    || || || ||||| ||||| || |||     
T  34571626 ttccagcgtcttgttcgtgaaattgctcaggatttcaagacggatttacgattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatt 34571527  T
Q  120 ttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgctaggcgtatccgtggcga 219  Q
    | ||||| |||||||||||||| ||  | || || || ||||||||| | ||||| || ||||||||||||||||| |||||| | ||||||||||| ||    
T  34571526 tggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgctcgccgtatccgtggtga 34571427  T
Q  220 gcgtgctt 227  Q
     |||||||    
T  34571426 acgtgctt 34571419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 34562751 - 34562636
Alignment:
Q  101 gaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttg 200  Q
    ||||| ||||| || ||| | ||||| |||||||||||||| ||  | || || || ||||||||| | ||||| || ||||||||||||||||| ||||    
T  34562751 gaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttg 34562652  T
Q  201 ctaggcgtatccgtgg 216  Q
    || | |||||||||||    
T  34562651 cttgccgtatccgtgg 34562636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 34579094 - 34579054
Alignment:
Q  20 ttccagcgtcttgttcgtgagattgctcaagatttcaagac 60  Q
    |||||||||||||||||||| ||||||||  ||||||||||    
T  34579094 ttccagcgtcttgttcgtgaaattgctcagaatttcaagac 34579054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 34584843 - 34584803
Alignment:
Q  20 ttccagcgtcttgttcgtgagattgctcaagatttcaagac 60  Q
    |||||||||||||||||||| ||||||||  ||||||||||    
T  34584843 ttccagcgtcttgttcgtgaaattgctcagaatttcaagac 34584803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 30959 - 31140
Alignment:
Q  20 ttccagcgtcttgttcgtgagattgctcaagatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatc 119  Q
    ||||| |||||||||||||| || ||||| |||||||| ||  ||||| | || ||||||  |||||| || || || |||||||| || || |||||||    
T  30959 ttccaacgtcttgttcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatc 31058  T
Q  120 ttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttgc 201  Q
    ||||||| |||||||| ||||| || || |||||||| ||||||||| | |||||||| ||||||||||||||||| |||||    
T  31059 ttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgc 31140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 227
Target Start/End: Complemental strand, 7594230 - 7594104
Alignment:
Q  101 gaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctatccatgctaagcgtgttactatcatgcctaaggatattcagcttg 200  Q
    ||||| || |||||||| || ||||||||||||||||| || || || || || || ||||||||| | || || || ||||| ||||||||||||||||    
T  7594230 gaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattcagcttg 7594131  T
Q  201 ctaggcgtatccgtggcgagcgtgctt 227  Q
    || | || || ||||| || |||||||    
T  7594130 ctcgtcgcattcgtggtgaacgtgctt 7594104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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