View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20062_low_2 (Length: 486)
Name: NF20062_low_2
Description: NF20062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20062_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 178 - 476
Target Start/End: Complemental strand, 38090692 - 38090394
Alignment:
| Q |
178 |
acttaaacttatagtacatagtatcaactcatggaaaacaaaaaatagtaccaaggaaattaaaggaaaccctaattaagtacaaggattttgaggctat |
277 |
Q |
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| T |
38090692 |
acttaaacttatagtacatagtatcaactcatggaaaacaaaaaatagtaccaaggaaattaaaggaaaccctaattaagtacaaggattttgaggctat |
38090593 |
T |
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| Q |
278 |
tactctgctagctggagattatctagagattaccaataaaagtaagaatttttataaatattttgcacaccaatcatcgatggtcattggtccaattata |
377 |
Q |
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| T |
38090592 |
tactctgctagctggagattatctagagattaccaataaaagtaaaaaaatttataaatattttgcacaccaatcatcgatggtcattgctccaattata |
38090493 |
T |
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| Q |
378 |
catttttgcactccaatattggcaatcattgccctaattatgcataatcgagaaatttattttcagttcgaaaatttctctcttgcttctctgtgctcc |
476 |
Q |
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| T |
38090492 |
catttttgcactccaatattgggaatcattgccctaattatgcataatcgacaaatttattttcagttcgaaaatttctctcttgcttctctgtgctcc |
38090394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 6 - 175
Target Start/End: Complemental strand, 38090929 - 38090762
Alignment:
| Q |
6 |
attaattaattaatatataatcaaagtcacgataatccaataaacataagatgctattaggaattatatccaaggcataattaaatagttaccacatgaa |
105 |
Q |
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| T |
38090929 |
attaattaattaatatataatcaaagtcacgataatccaataaacataagatgctattaggaattat--ccaaggtataattaaatagttaccacatgaa |
38090832 |
T |
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| Q |
106 |
atgatctatgaaatctgtacgtatattgatttaggtattaagaggcgtattaggagctctttttgaaatt |
175 |
Q |
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| T |
38090831 |
atgatctatgaaatctgtacgtatattgatttaggtattaagaggcgtattaggagctcttttcgaaatt |
38090762 |
T |
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