View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20062_low_4 (Length: 423)
Name: NF20062_low_4
Description: NF20062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20062_low_4 |
 | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 1042382 - 1041978
Alignment:
| Q |
1 |
gagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaac |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1042382 |
gagaactgctcccaccgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaac |
1042283 |
T |
|
| Q |
101 |
aaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattatta |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1042282 |
aaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattctattatta |
1042183 |
T |
|
| Q |
201 |
caacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattcttat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1042182 |
caacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattcttct |
1042083 |
T |
|
| Q |
301 |
tgtgcctcatttcctttccatccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaaattgcttccatttcatccccacgatgccctt |
400 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
1042082 |
tgtgcctcatttcctttccgtccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaacttgcttccatttcatccccacgacgccctt |
1041983 |
T |
|
| Q |
401 |
taagt |
405 |
Q |
| |
|
||||| |
|
|
| T |
1041982 |
taagt |
1041978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 41193447 - 41193043
Alignment:
| Q |
1 |
gagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaac |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
41193447 |
gagaactgctcccaccgtatgaaaccgagatattcgcggttgaagggttgaaatcaaacctgcaccaatccaacaatcaacactggtttgactttcaaac |
41193348 |
T |
|
| Q |
101 |
aaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattatta |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41193347 |
aaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattctattatta |
41193248 |
T |
|
| Q |
201 |
caacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattcttat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41193247 |
caacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattcttct |
41193148 |
T |
|
| Q |
301 |
tgtgcctcatttcctttccatccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaaattgcttccatttcatccccacgatgccctt |
400 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
41193147 |
tgtgcctcatttcctttccgtccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaacttgcttccatttcatccccacgacgccctt |
41193048 |
T |
|
| Q |
401 |
taagt |
405 |
Q |
| |
|
||||| |
|
|
| T |
41193047 |
taagt |
41193043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 41200703 - 41200299
Alignment:
| Q |
1 |
gagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaac |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
41200703 |
gagaactgctcccaccgtatgaaaccgagatattcgcggttgaagggttgaaatcaaacctgcaccaatccaacaatcaacactggtttgactttcaaac |
41200604 |
T |
|
| Q |
101 |
aaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattatta |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41200603 |
aaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattctattatta |
41200504 |
T |
|
| Q |
201 |
caacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattcttat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41200503 |
caacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattcttct |
41200404 |
T |
|
| Q |
301 |
tgtgcctcatttcctttccatccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaaattgcttccatttcatccccacgatgccctt |
400 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
41200403 |
tgtgcctcatttcctttccgtccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaacttgcttccatttcatccccacgacgccctt |
41200304 |
T |
|
| Q |
401 |
taagt |
405 |
Q |
| |
|
||||| |
|
|
| T |
41200303 |
taagt |
41200299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 41408544 - 41408355
Alignment:
| Q |
18 |
tatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccga |
117 |
Q |
| |
|
||||||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| || |
|
|
| T |
41408544 |
tatgaaaccgagacatttgctgttgaagggatgaaatcaaacctgcagtagtccaacaatcaacagcggtttgactttcaaacaaaatatgcccctcgga |
41408445 |
T |
|
| Q |
118 |
ttcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaat |
207 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
41408444 |
ttcaacagaaaatgcgcaaagctcgcagtttatcggacaggaaaatacattgcaatattgaagagcatcttattgcattattacaacaat |
41408355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 33323973 - 33323569
Alignment:
| Q |
1 |
gagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaac |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
33323973 |
gagaactgctcccaccgtatgaaaccgagatattcgcggttgaagggttgaaatcaaacctgcatcattccaacaatcaacactggtttgactttcaaac |
33323874 |
T |
|
| Q |
101 |
aaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattatta |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323873 |
aaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattctattatta |
33323774 |
T |
|
| Q |
201 |
caacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattcttat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33323773 |
caacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattcttct |
33323674 |
T |
|
| Q |
301 |
tgtgcctcatttcctttccatccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaaattgcttccatttcatccccacgatgccctt |
400 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
33323673 |
tgtgcctcatttcctttccgtccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaacttgcttccatttcatccccacgacgccctt |
33323574 |
T |
|
| Q |
401 |
taagt |
405 |
Q |
| |
|
||||| |
|
|
| T |
33323573 |
taagt |
33323569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2406 - 2632
Alignment:
| Q |
1 |
gagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaac |
100 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
2406 |
gagaactgttcccaccgtatgaaatcgagacatt-gatgttgaagggttgaaatcaaacctgcagtagtccaacaatcaacagtggtttgactttcaaac |
2504 |
T |
|
| Q |
101 |
aaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattatta |
200 |
Q |
| |
|
|||||| ||||| |||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
2505 |
aaaatatgccccttggattcaacagaaaatgcgcaaagctcacagtttatcggacaggaaaatacattgcaattttgaagagcatcttattgcattatta |
2604 |
T |
|
| Q |
201 |
caacaatctc-gcgaacttcatatcttt |
227 |
Q |
| |
|
|||||||||| | ||||||||||||||| |
|
|
| T |
2605 |
caacaatctcggtgaacttcatatcttt |
2632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 22911 - 23100
Alignment:
| Q |
18 |
tatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccga |
117 |
Q |
| |
|
||||||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| || |
|
|
| T |
22911 |
tatgaaaccgagacatttgctgttgaagggatgaaatcaaacctgcagtagtccaacaatcaacagcggtttgactttcaaacaaaatatgcccctcgga |
23010 |
T |
|
| Q |
118 |
ttcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaat |
207 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
23011 |
ttcaacagaaaatgcgcaaagctcgcagtttatcggacaggaaaatacattgcaatattgaagagcatcttattgcattattacaacaat |
23100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 309
Target Start/End: Complemental strand, 38951799 - 38951714
Alignment:
| Q |
224 |
ctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattcttattgtgcctca |
309 |
Q |
| |
|
|||||||||| || ||||| |||||| ||||||||||| |||| | || ||| |||||||||||| |||||||| || ||||||| |
|
|
| T |
38951799 |
ctttcctgatgttcacaaaacgcttcaaccagtttttcctattagctttaccattatcgaaatcccaaaattcttcttttgcctca |
38951714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University