View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20062_low_7 (Length: 385)
Name: NF20062_low_7
Description: NF20062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20062_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 4109163 - 4108807
Alignment:
| Q |
16 |
acgtaggtcttgcataatatgaaggagggaaaggtgggagggtgggagaaggaaagatgattgaggatgg----gtgggtgatgaagtgtgtgaaattat |
111 |
Q |
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| T |
4109163 |
acgtaggtcttgcataatatgaaggagggaaaggtgggagggtgggagaagggaagatgattgaggatggatgggtgggtgatgaagtgtgtgaaattat |
4109064 |
T |
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| Q |
112 |
ttcaatttaatgaatgaaggaagnnnnnnnnnnnnnnnnnnntaagaagtgttagtgttggaattgtgggagattttatttataaaaatgaaaagaagaa |
211 |
Q |
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| T |
4109063 |
ttcaatttaatgaatgaaggaaggagagagagagag------taagaagtgttagtgttggaattgtgggagattttatttataaaaatgaaaagaagaa |
4108970 |
T |
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| Q |
212 |
gactttgtgcttgcttacatcattgaactagtgtttttcttcaccttaacataacaacaccctcttcctatttctttcttctatgcttccctcacgcgcg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4108969 |
gactttgtgcttgcttacatcattgaactagtgtttttcttcaccttaacataacaacaccctcttcctatttctttcttctatgcttccctcacgcgcg |
4108870 |
T |
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| Q |
312 |
gttttgtcatttctctatgtcatgtttcttttactttggccttttactttttagatgatgatg |
374 |
Q |
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| T |
4108869 |
gttttgtcatttctctatgtcatgtttcttttactttggccttttactttttagatgatgatg |
4108807 |
T |
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