View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20062_low_9 (Length: 365)
Name: NF20062_low_9
Description: NF20062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20062_low_9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 365
Target Start/End: Complemental strand, 7843644 - 7843294
Alignment:
| Q |
15 |
tctcctggaagttacaatttgagaaattaagaattatgcatgtgtatacagggcgccactgtgtgtatatacaaatgtccaacactcaannnnnnnatat |
114 |
Q |
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| T |
7843644 |
tctcctggaagttacgatttgagaaattaagaattatgcatgtgtatacagggcgccacggtgtgtatatacaaatgtccaacactcaatttttttatat |
7843545 |
T |
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| Q |
115 |
tttgcgaccaattttacaaacaagttattaaattggtctctgcatagaagtgtgctacacctattgattaggggattgatggatgacttaagcagttctt |
214 |
Q |
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| T |
7843544 |
tttgcgaccaatttaacaaacaagttattaaattggtctctgcatcgaagtgtgctacaccaattgattaggggattgatggacgacttaagcagttctt |
7843445 |
T |
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| Q |
215 |
gtgcatatatattttagtccgaaccttaaatgtgtgtttgcaattattgttgcagaagtttggggttagaaaataatgattgcacccaaaacatgaagta |
314 |
Q |
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| T |
7843444 |
gtgcatatatattttagtccgaaccttaaatgtgtgtttgcaattattgttgcagaagtttggggttagaaaatgatgattgcacccaaaacatgaagta |
7843345 |
T |
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| Q |
315 |
taaagctgaagatgctgcttcaagggccacagacacaatgaaatctgcagc |
365 |
Q |
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| T |
7843344 |
taaagctgaagatgctgcttcaagggccacagacacaatgaaatctgcagc |
7843294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 236 - 326
Target Start/End: Complemental strand, 7844399 - 7844309
Alignment:
| Q |
236 |
aaccttaaatgtgtgtttgcaattattgttgcagaagtttggggttagaaaataatgattgcacccaaaacatgaagtataaagctgaaga |
326 |
Q |
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| T |
7844399 |
aaccttaaatgtgtgtttgcaattattattgcagaagtttggggttggaaaataatgatgccactcaaaacatgaggcataaagctgaaga |
7844309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 7844500 - 7844452
Alignment:
| Q |
15 |
tctcctggaagttacaatttgagaaattaagaattatgcatgtgtatac |
63 |
Q |
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| T |
7844500 |
tctcctggaaattagattttcagaaattaagaatcatgcatgtgtatac |
7844452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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