View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20063_high_6 (Length: 426)
Name: NF20063_high_6
Description: NF20063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20063_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 5688810 - 5688431
Alignment:
| Q |
1 |
atgtgtagagctctcaaaatgggttatctaaccttaaacagatcggccttaacaacctttatcgcgttaggccaaaaagttctttcaagtatgagctata |
100 |
Q |
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| T |
5688810 |
atgtgtagagctctcaaaatgggttatctaaccttaaagagatcggccctaacaacctttatcgctttaggccaaaaagttctttcaagtacgagctata |
5688711 |
T |
|
| Q |
101 |
aaaatactatatgaagtcggccctatgtatgagttgttgattaaaaaggtaagaccttatttannnnnnngaaaatattataaagactctcacaaaattt |
200 |
Q |
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| T |
5688710 |
aaaatactatatgaagtcggccctatgtatgagttgttgattaaaaaggtaagaccttatttatttttttgaaaatattataaagactctcacaaaattt |
5688611 |
T |
|
| Q |
201 |
cttataaacattattttgnnnnnnnntctgagactatattttatgattcaaactctacattttattagatttggcgggctagcccatttttacaactcta |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5688610 |
cttataaacattattttgaaaaaaaatctgagactatattttatggttcaaactctacattttattagatttggcgggctagcccatttttaca------ |
5688517 |
T |
|
| Q |
301 |
aatatgtatgtggaacctgtaagtgaagttggtagtgatggaggtgaagttgtgcgtcttagaccagccttttgtttactcataatgttgtactggcggg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5688516 |
---------gtggaacctgtaagtgaagttggtagtgatggaggtgaagtt------------ccagccttttgtttactcataatgttgtactggcggg |
5688438 |
T |
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