View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20063_low_1 (Length: 649)

Name: NF20063_low_1
Description: NF20063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20063_low_1
NF20063_low_1
[»] chr6 (14 HSPs)
chr6 (4-132)||(15482807-15482937)
chr6 (202-411)||(15484912-15485121)
chr6 (501-594)||(15485212-15485305)
chr6 (185-282)||(32191483-32191581)
chr6 (64-117)||(24217068-24217121)
chr6 (371-411)||(15490296-15490336)
chr6 (84-163)||(20891713-20891792)
chr6 (61-117)||(30754938-30754994)
chr6 (160-281)||(6257524-6257642)
chr6 (58-126)||(12331832-12331899)
chr6 (212-263)||(10704174-10704225)
chr6 (212-263)||(30892121-30892172)
chr6 (163-252)||(17211415-17211504)
chr6 (73-129)||(12478494-12478550)
[»] chr7 (15 HSPs)
chr7 (160-353)||(20117925-20118118)
chr7 (27-151)||(17999813-17999936)
chr7 (64-129)||(15817846-15817911)
chr7 (64-163)||(26426774-26426872)
chr7 (171-268)||(12425311-12425408)
chr7 (171-265)||(31727429-31727523)
chr7 (243-353)||(5907293-5907403)
chr7 (90-140)||(8250232-8250282)
chr7 (84-140)||(16206285-16206341)
chr7 (73-129)||(20146941-20146997)
chr7 (64-163)||(17910169-17910267)
chr7 (84-126)||(3135414-3135456)
chr7 (25-129)||(19432393-19432497)
chr7 (168-257)||(36390119-36390208)
chr7 (73-129)||(17842994-17843050)
[»] chr1 (13 HSPs)
chr1 (160-288)||(18650172-18650300)
chr1 (160-282)||(18628703-18628825)
chr1 (160-274)||(26924862-26924974)
chr1 (171-274)||(26759574-26759675)
chr1 (58-163)||(11843488-11843593)
chr1 (171-282)||(26762467-26762578)
chr1 (172-324)||(16256682-16256836)
chr1 (198-268)||(11871655-11871725)
chr1 (185-257)||(50959285-50959356)
chr1 (171-238)||(16219419-16219486)
chr1 (6-100)||(15807031-15807124)
chr1 (311-353)||(41708099-41708141)
chr1 (160-253)||(15309235-15309328)
[»] chr3 (16 HSPs)
chr3 (164-282)||(47005575-47005693)
chr3 (224-356)||(3369269-3369400)
chr3 (25-163)||(30084107-30084243)
chr3 (206-353)||(28421453-28421600)
chr3 (61-163)||(19978670-19978772)
chr3 (171-238)||(24405344-24405411)
chr3 (85-163)||(10711935-10712015)
chr3 (177-282)||(51663687-51663792)
chr3 (199-275)||(23006150-23006226)
chr3 (96-163)||(30177593-30177660)
chr3 (77-125)||(7254471-7254519)
chr3 (160-204)||(20708998-20709042)
chr3 (171-238)||(17765867-17765934)
chr3 (171-238)||(19067187-19067254)
chr3 (85-143)||(24901755-24901813)
chr3 (311-353)||(41907384-41907425)
[»] chr8 (11 HSPs)
chr8 (160-362)||(18003832-18004033)
chr8 (25-150)||(24270274-24270400)
chr8 (185-353)||(25140341-25140510)
chr8 (1-126)||(15062017-15062143)
chr8 (47-126)||(16216040-16216119)
chr8 (160-353)||(10658858-10659052)
chr8 (66-132)||(23863535-23863601)
chr8 (177-282)||(5949869-5949974)
chr8 (160-241)||(41939904-41939985)
chr8 (171-238)||(14442390-14442457)
chr8 (64-140)||(17124557-17124633)
[»] chr5 (5 HSPs)
chr5 (58-163)||(25559324-25559428)
chr5 (160-298)||(34793104-34793240)
chr5 (58-118)||(30191015-30191074)
chr5 (5-118)||(26058085-26058198)
chr5 (199-268)||(36879224-36879293)
[»] chr2 (10 HSPs)
chr2 (198-281)||(22193512-22193595)
chr2 (25-117)||(18332192-18332283)
chr2 (84-140)||(27401952-27402008)
chr2 (214-275)||(35114317-35114378)
chr2 (160-353)||(38002214-38002409)
chr2 (160-238)||(3771039-3771117)
chr2 (160-266)||(8216523-8216629)
chr2 (212-266)||(17531440-17531494)
chr2 (185-238)||(36254800-36254853)
chr2 (212-296)||(33619480-33619564)
[»] scaffold0431 (1 HSPs)
scaffold0431 (25-129)||(13934-14037)
[»] chr4 (17 HSPs)
chr4 (58-124)||(13933012-13933078)
chr4 (73-163)||(10116289-10116379)
chr4 (233-353)||(45199341-45199459)
chr4 (64-118)||(12410320-12410374)
chr4 (64-126)||(18420801-18420863)
chr4 (25-124)||(11923957-11924054)
chr4 (160-238)||(20650294-20650372)
chr4 (160-298)||(21121841-21121977)
chr4 (160-277)||(44206738-44206856)
chr4 (225-282)||(2406312-2406369)
chr4 (212-268)||(20181838-20181894)
chr4 (163-238)||(10330106-10330180)
chr4 (64-119)||(20749888-20749943)
chr4 (206-281)||(44274399-44274473)
chr4 (235-281)||(41421197-41421243)
chr4 (160-248)||(21081753-21081841)
chr4 (225-281)||(53813649-53813705)
[»] scaffold0086 (1 HSPs)
scaffold0086 (25-132)||(11301-11407)
[»] scaffold0338 (1 HSPs)
scaffold0338 (25-143)||(18549-18668)
[»] scaffold0111 (1 HSPs)
scaffold0111 (58-129)||(28579-28649)
[»] scaffold0035 (2 HSPs)
scaffold0035 (85-140)||(64358-64413)
scaffold0035 (25-118)||(71292-71383)
[»] scaffold0014 (1 HSPs)
scaffold0014 (24-163)||(201793-201929)
[»] scaffold0100 (1 HSPs)
scaffold0100 (312-348)||(32377-32413)
[»] scaffold0123 (1 HSPs)
scaffold0123 (73-138)||(33071-33136)


Alignment Details
Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 15482807 - 15482937
Alignment:
Q  4 agtatgtatatgtatgataaatgaaatccttgaatgcttatacttgactatgtgttattatgtggaaaat---tatctaacctccagtggtcgtttggtt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| ||   ||||||||| ||| |||| ||||||||    
T  15482807 agtatttatatgtatgataaatgaaatccttgaatgcttatacttgattatat-ttattatgtggaatatttatatctaacccccattggtagtttggtt 15482905  T
Q  101 taccgcctgcctatttgtgtgaatgggtatac 132  Q
    ||| |||| |||| ||||||||||||||||||    
T  15482906 tactgccttcctagttgtgtgaatgggtatac 15482937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 202 - 411
Target Start/End: Original strand, 15484912 - 15485121
Alignment:
Q  202 cgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgatttatcacgacgtattcccgtttgactttttcctaggtcaagt 301  Q
    |||||| ||||||||||||||| ||| ||||||||||||||||||||  |  ||||||||||||||| |||||| | ||||   |||||||  ||||  |    
T  15484912 cgcttgcgactagtgaatttttgttatgatagattagagtagatccatcttaactgatttatcacgatgtattctcatttg-ggttttcctgagtcagat 15485010  T
Q  302 ctattatctccccaatctttgtatctttgtcgttttatttaatatattttctgttatgc-ttgnnnnnnntggtccttcaattattttaaacaaatgtat 400  Q
    ||||| ||||| || ||||||||||||| ||||||||||||||||||||||| || ||| |          ||||||||||||||||||||||||||| |    
T  15485011 ctattgtctcctcagtctttgtatctttctcgttttatttaatatattttctattttgcataaaaaaaaaaggtccttcaattattttaaacaaatgtct 15485110  T
Q  401 cttttctatcg 411  Q
    |||||| ||||    
T  15485111 cttttcaatcg 15485121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 501 - 594
Target Start/End: Original strand, 15485212 - 15485305
Alignment:
Q  501 gaatgcgtcacattcacttccaatctaaaaaatactaagctaagagaaatcacaacaatagtaaggattcgataaacttgattcaatccaaaac 594  Q
    ||||||||||||||||||||||||| || |||| ||||||||||||||||| | ||||| ||||||||||||||| |||| |||||||||||||    
T  15485212 gaatgcgtcacattcacttccaatccaagaaatgctaagctaagagaaatcgcgacaatggtaaggattcgataatcttggttcaatccaaaac 15485305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 282
Target Start/End: Original strand, 32191483 - 32191581
Alignment:
Q  185 gcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgatttatcacga-cgtattcccgtttg 282  Q
    |||||||||||  ||||||   |||| ||||| |||||| ||||||||||||||||| |  |||||||||| ||||||||||||  |||||||||||||    
T  32191483 gcgggtttgctgggttgcgtcagtgattagtgtatttttgttaggatagattagagttgtaccacttggacagatttatcacgatggtattcccgtttg 32191581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 24217121 - 24217068
Alignment:
Q  64 tgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttg 117  Q
    |||||||||| |||||||| ||||||||||||||||| |||||| |||||||||    
T  24217121 tgtggaaaataatctaacccccagtggtcgtttggttgaccgccagcctatttg 24217068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 15490296 - 15490336
Alignment:
Q  371 tggtccttcaattattttaaacaaatgtatcttttctatcg 411  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  15490296 tggtccttcaattattttaaacaaatgtctcttttctatcg 15490336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 20891792 - 20891713
Alignment:
Q  84 ccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgg-gtatacagcgtgcatgactgattttcttattgcttgt 163  Q
    ||||||||||||||||| ||||||| || |||||| ||||||| ||| || |||||||||| ||| |||||||||||||||    
T  20891792 ccagtggtcgtttggttgaccgcctacccatttgtatgaatggtgtagacggcgtgcatgattga-tttcttattgcttgt 20891713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 30754938 - 30754994
Alignment:
Q  61 ttatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttg 117  Q
    |||||||||| ||||||||||||| |||||||||||| || |||| |||||||||||    
T  30754938 ttatgtggaatattatctaacctcaagtggtcgtttgattgaccgtctgcctatttg 30754994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 160 - 281
Target Start/End: Original strand, 6257524 - 6257642
Alignment:
Q  160 ttgtaacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgat 259  Q
    |||||||||| |||||  |||||| ||||||| |||  ||||||| | ||| ||||| ||||||  |||||||   |||||| ||| |||||||||||||    
T  6257524 ttgtaacttggtttcgcacccgtacgcgggttcgctgggttgcgcctatgattagtgtatttttgctaggata---tagagttgattcacttggactgat 6257620  T
Q  260 ttatcacgacgtattcccgttt 281  Q
    || |||||  ||||||||||||    
T  6257621 ttttcacgttgtattcccgttt 6257642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 12331832 - 12331899
Alignment:
Q  58 ttattatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgg 126  Q
    ||||||||||||| || |||||||| ||||||||||||| ||| ||||||| || |||||| |||||||    
T  12331832 ttattatgtggaatataatctaacc-ccagtggtcgtttagttgaccgcctacccatttgtatgaatgg 12331899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 10704174 - 10704225
Alignment:
Q  212 tagtgaatttttcttaggatagattagagtagatccacttggactgatttat 263  Q
    ||||| ||||||  |||||||||||||||| ||||||| |||||||||||||    
T  10704174 tagtgtatttttgctaggatagattagagttgatccacatggactgatttat 10704225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 30892172 - 30892121
Alignment:
Q  212 tagtgaatttttcttaggatagattagagtagatccacttggactgatttat 263  Q
    ||||| |||||| ||||||||||||||||| | |||||||||||| ||||||    
T  30892172 tagtgtatttttgttaggatagattagagttgttccacttggactaatttat 30892121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 17211415 - 17211504
Alignment:
Q  163 taacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttg 252  Q
    ||||||| ||||| | ||||| ||||||||| |  ||||| |||||||  ||||||||||| ||| |||||||||| |  ||||||||||    
T  17211415 taacttggtttcgcgtccgtacgcgggtttgttgggttgcacttgtgataagtgaatttttgttatgatagattagggctgatccacttg 17211504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 12478494 - 12478550
Alignment:
Q  73 ttatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggta 129  Q
    ||||||| || ||||||||||||||||| | |||||| ||||| || ||||||||||    
T  12478494 ttatctagcccccagtggtcgtttggttgaacgcctgtctattcgtatgaatgggta 12478550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 160 - 353
Target Start/End: Complemental strand, 20118118 - 20117925
Alignment:
Q  160 ttgtaacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgat 259  Q
    ||||| |||| ||||| ||||||| ||||||| ||  |||||||| | ||| |||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  20118118 ttgtagcttggtttcgcgcccgtacgcgggttcgccgagttgcgcctatgattagtgaatttttgttaggatagattagagttgatccacttggattgat 20118019  T
Q  260 ttatcacga-cgtattcccgtttgactttttcctaggtcaagtctattatctccccaatctttgtatctttgtcgttttatttaatatattttct 353  Q
    |||||||||  ||||| || ||||  || |||||| |||| ||||  |||| || |||||||||||||| | || ||||||||| ||||||||||    
T  20118018 ttatcacgattgtatttccatttgggttattcctaagtcaggtcttatatcccctcaatctttgtatctct-tctttttatttattatattttct 20117925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 17999813 - 17999936
Alignment:
Q  27 aaatccttgaatgcttatacttgactatgtgttattatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgg 126  Q
    |||||||||||||||| |||||||  ||   |||||| |||||| |||||||||||  |||||||||||||||| | ||||||||||||||| |||||||    
T  17999813 aaatccttgaatgctt-tacttgataataatttattacgtggaatattatctaaccctcagtggtcgtttggttgatcgcctgcctatttgtatgaatgg 17999911  T
Q  127 gtatacagcgtgcatgactgatttt 151  Q
    ||| || ||||| | ||||||||||    
T  17999912 gtagacggcgtgtaagactgatttt 17999936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 15817846 - 15817911
Alignment:
Q  64 tgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggta 129  Q
    ||||||| ||||||||||||||||||||||||||||| |||| |||||||||||  ||||||||||    
T  15817846 tgtggaatattatctaacctccagtggtcgtttggttgaccgtctgcctatttgaatgaatgggta 15817911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 26426872 - 26426774
Alignment:
Q  64 tgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggtatacagcgtgcatgactgattttcttattgcttgt 163  Q
    ||||||| |||||||||| || ||||||||||||||| |||| |||||||||||| ||||||| || || | ||||| || |||| ||||||||||||||    
T  26426872 tgtggaatattatctaac-tctagtggtcgtttggttgaccgtctgcctatttgtatgaatggataaacggtgtgcaggagtgatcttcttattgcttgt 26426774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 268
Target Start/End: Complemental strand, 12425408 - 12425311
Alignment:
Q  171 tttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgatttatcacga 268  Q
    ||||| ||||||| ||||||| |||  ||||||| | ||| |||||||||||| |||||||| |||||||| ||| |||||||  |||||||||||||    
T  12425408 tttcgagcccgtacgcgggttcgcttggttgcgcctatgattagtgaatttttgttaggatatattagagttgatgcacttgggttgatttatcacga 12425311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 31727523 - 31727429
Alignment:
Q  171 tttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgatttatca 265  Q
    ||||| ||||||| ||||||| ||| |||||||  ||||| ||||||| |||| |||||||||||||||||||| ||| || |  ||||||||||    
T  31727523 tttcgcgcccgtacgcgggttcgctgagttgcgtctgtgattagtgaacttttgttaggatagattagagtagacccatttaggttgatttatca 31727429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 353
Target Start/End: Original strand, 5907293 - 5907403
Alignment:
Q  243 gatccacttggactgatttatcacgacgtattcccgtttgactttttcctaggtcaagtctattatctccccaatctttgtatctttgtcgttttattta 342  Q
    |||||| |||||||| |||||||||| ||||| || ||||  || ||||||||||| || || | ||||| || ||||||||||| | || ||||||||     
T  5907293 gatccatttggactgttttatcacgatgtatttccttttggattattcctaggtcaggtttactgtctcctcagtctttgtatctctttctttttatttt 5907392  T
Q  343 atatattttct 353  Q
    | |||||||||    
T  5907393 aaatattttct 5907403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 8250282 - 8250232
Alignment:
Q  90 gtcgtttggtttaccgcctgcctatttgtgtgaatgggtatacagcgtgca 140  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||| ||||    
T  8250282 gtcgtttggttgaccgcctgcctatttgtatgaatgggtagacagcttgca 8250232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 16206341 - 16206285
Alignment:
Q  84 ccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggtatacagcgtgca 140  Q
    |||||||||||| | || ||||||||||||||||| |||||||||| ||||| ||||    
T  16206341 ccagtggtcgttcgattgaccgcctgcctatttgtatgaatgggtagacagcttgca 16206285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 20146997 - 20146941
Alignment:
Q  73 ttatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggta 129  Q
    ||||||| || ||||||||||||||||| |||| |||||||||| | ||||||||||    
T  20146997 ttatctagcccccagtggtcgtttggttgaccgtctgcctatttatatgaatgggta 20146941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 17910267 - 17910169
Alignment:
Q  64 tgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggtatacagcgtgcatgactgattttcttattgcttgt 163  Q
    ||||||| || ||||| || | ||||||||||||||| |||| |||||||||||| |||||| ||| || || |||| || |||||| ||| ||||||||    
T  17910267 tgtggaatataatctagccccaagtggtcgtttggttgaccgtctgcctatttgtatgaatgagtagacggcttgcaggagtgatttgctt-ttgcttgt 17910169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 3135456 - 3135414
Alignment:
Q  84 ccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgg 126  Q
    ||||||||||||||||| ||||||| ||||||||| |||||||    
T  3135456 ccagtggtcgtttggttgaccgcctacctatttgtatgaatgg 3135414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 19432393 - 19432497
Alignment:
Q  25 tgaaatccttgaatgcttatacttgactatgtgttattatgtggaaaattatctaacctcca-gtggtcgtttggtttaccgcctgcctatttgtgtgaa 123  Q
    ||||||| |||||||||  |  |||| ||| | ||||||| ||||| |||||||||| |||| || ||||||||||| |||| |||||||||||  ||||    
T  19432393 tgaaatcattgaatgctatttattgattatattttattatatggaatattatctaac-tccacgtagtcgtttggttgaccgtctgcctatttggatgaa 19432491  T
Q  124 tgggta 129  Q
    ||||||    
T  19432492 tgggta 19432497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 36390119 - 36390208
Alignment:
Q  168 tgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactg 257  Q
    |||||||| || |||| ||||||| |||  ||| ||| ||||| || || |||||| |||||||| |||||||| | |||||||||||||    
T  36390119 tgatttcgcgctcgtacgcgggttcgctgggttacgcatgtgattaatggattttttttaggataaattagagttgttccacttggactg 36390208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 17843050 - 17842994
Alignment:
Q  73 ttatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggta 129  Q
    ||||||||||  || ||||||||||||| ||||| ||||||| ||| ||||||||||    
T  17843050 ttatctaaccctcaatggtcgtttggttgaccgcatgcctatctgtatgaatgggta 17842994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 160 - 288
Target Start/End: Complemental strand, 18650300 - 18650172
Alignment:
Q  160 ttgtaacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgat 259  Q
    |||||||||| ||||| ||||||| ||||||| ||| |||||||  ||||| ||||| |||||| ||||||||| ||||||| |||||||||||||||||    
T  18650300 ttgtaacttggtttcgcgcccgtacgcgggttcgctgagttgcgtctgtgattagtggatttttgttaggataggttagagtggatccacttggactgat 18650201  T
Q  260 ttatcacgacgtattcccgtttgactttt 288  Q
    || |||||| ||||| |||||||| ||||    
T  18650200 ttttcacgatgtatttccgtttgagtttt 18650172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 160 - 282
Target Start/End: Complemental strand, 18628825 - 18628703
Alignment:
Q  160 ttgtaacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgat 259  Q
    ||||||| || ||||| ||||||| ||||||| |||| |||||||  |||| |||||||||||| ||||||||||| ||||||||||||||| | || ||    
T  18628825 ttgtaacctggtttcgcgcccgtacgcgggttcgctaggttgcgcccgtgattagtgaatttttgttaggatagataagagtagatccacttaggcttat 18628726  T
Q  260 ttatcacgacgtattcccgtttg 282  Q
    | |||||||  ||||||||||||    
T  18628725 tcatcacgatatattcccgtttg 18628703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 26924974 - 26924862
Alignment:
Q  160 ttgtaacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgat 259  Q
    |||||| ||| ||||||| ||||| |||||||||||   |||||||||||| ||||||| |||| |||| ||||||||||||||||||| ||||||||||    
T  26924974 ttgtaatttggtttcgtgtccgtacgcgggtttgctggattgcgcttgtgattagtgaa-ttttgttagaatagattagagtagatcca-ttggactgat 26924877  T
Q  260 ttatcacgacgtatt 274  Q
    ||||||||| |||||    
T  26924876 ttatcacgatgtatt 26924862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 171 - 274
Target Start/End: Original strand, 26759574 - 26759675
Alignment:
Q  171 tttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgatttatcacgacg 270  Q
    ||||||| ||||| ||||||| | || ||||||||||||| ||||||| |||| |||| ||||||||||||||||||| ||||||||||||||||||| |    
T  26759574 tttcgtgtccgtacgcgggttcgttaggttgcgcttgtgattagtgaa-ttttgttagaatagattagagtagatcca-ttggactgatttatcacgatg 26759671  T
Q  271 tatt 274  Q
    ||||    
T  26759672 tatt 26759675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 163
Target Start/End: Complemental strand, 11843593 - 11843488
Alignment:
Q  58 ttattatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggtatacagcgtgcatgactgattttcttatt 157  Q
    ||||||||||||| || |||||||| | ||||||||||||||| ||| ||||||||||||| | |||||||| ||  | | || |||||| | |||||||    
T  11843593 ttattatgtggaatataatctaacccctagtggtcgtttggttgaccccctgcctatttgtattaatgggtagacgacatacaagactgactctcttatt 11843494  T
Q  158 gcttgt 163  Q
    ||||||    
T  11843493 gcttgt 11843488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 282
Target Start/End: Original strand, 26762467 - 26762578
Alignment:
Q  171 tttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgatttatcacgacg 270  Q
    ||||| ||||||| || |||| |||  |||||||  |||| ||||| |||||| ||||||||||||||||| | ||||||||| ||| ||||||| || |    
T  26762467 tttcgcgcccgtacgctggttcgctgggttgcgccagtgattagtgtatttttgttaggatagattagagttgttccacttgggctgttttatcatgatg 26762566  T
Q  271 tattcccgtttg 282  Q
    ||| ||||||||    
T  26762567 tatccccgtttg 26762578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 172 - 324
Target Start/End: Original strand, 16256682 - 16256836
Alignment:
Q  172 ttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattaga--gtagatccacttggactgatttatcacgac 269  Q
    |||| ||||||| ||||||| |||   |||||| | ||| |||||||||||| |||  ||||||||||  || |||||| |||||||| ||||||| ||     
T  16256682 ttcgcgcccgtacgcgggttcgctggattgcgcctatgattagtgaatttttgttaaaatagattagagtgttgatccatttggactgttttatcatgat 16256781  T
Q  270 gtattcccgtttgactttttcctaggtcaagtctattatctccccaatctttgta 324  Q
    |||| ||||||||| ||  |||| ||||| ||||| | || ||||| ||||||||    
T  16256782 gtatccccgtttgagttaatcctgggtcaggtctaatgtccccccagtctttgta 16256836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 268
Target Start/End: Original strand, 11871655 - 11871725
Alignment:
Q  198 gttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgatttatcacga 268  Q
    |||||||  |||| || ||||||||| |||||||||||||||||| |||||||| |  |||||||||||||    
T  11871655 gttgcgccagtgattattgaatttttgttaggatagattagagtatatccacttaggttgatttatcacga 11871725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 50959356 - 50959285
Alignment:
Q  185 gcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactg 257  Q
    ||||||| |||| ||||||||||||| ||||||| |||| ||| ||||||||||||| | ||||||| |||||    
T  50959356 gcgggttcgctaggttgcgcttgtgattagtgaa-ttttgttatgatagattagagttgttccacttagactg 50959285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 16219419 - 16219486
Alignment:
Q  171 tttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattag 238  Q
    ||||||||||||| ||||||| |||  ||||| |  ||||||||||||||||| |||| |||||||||    
T  16219419 tttcgtgcccgtacgcgggttcgctgggttgcacccgtgactagtgaatttttgttagaatagattag 16219486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 15807031 - 15807124
Alignment:
Q  6 tatgtatatgtatgataaatgaaatccttgaatgcttatacttgactatgtgttattatgtggaaaattatctaacctccagtggtcgtttggtt 100  Q
    ||||||||||| | ||  |||||||||||||||||||||  |||| ||||  ||| | |||||||  |||||||||| | |||||||||||||||    
T  15807031 tatgtatatgtgttatgcatgaaatccttgaatgcttatgtttgattatgctttaat-tgtggaatgttatctaacccctagtggtcgtttggtt 15807124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 41708141 - 41708099
Alignment:
Q  311 ccccaatctttgtatctttgtcgttttatttaatatattttct 353  Q
    ||||||||||||| ||||| || ||||||||||||||||||||    
T  41708141 ccccaatctttgtgtctttttctttttatttaatatattttct 41708099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 15309235 - 15309328
Alignment:
Q  160 ttgtaacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttgg 253  Q
    |||||||||| ||||||||| ||| || |||| ||| ||||||| | ||||  ||||||||||| ||| ||||| |||| || | |||||||||    
T  15309235 ttgtaacttggtttcgtgcctgtaagcaggttcgctgagttgcgttagtgataagtgaatttttgttacgatagtttagggttggtccacttgg 15309328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 164 - 282
Target Start/End: Complemental strand, 47005693 - 47005575
Alignment:
Q  164 aacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgatttat 263  Q
    |||||| ||||| || |||| ||||||| |||| ||||||  ||||| |||||||||||  ||||||||||||||||||||||||||||||||| |||||    
T  47005693 aacttggtttcgcgctcgtacgcgggttcgctaggttgcgtatgtgattagtgaattttggttaggatagattagagtagatccacttggactgctttat 47005594  T
Q  264 cacgacgtattcccgtttg 282  Q
    ||||| ||||||| |||||    
T  47005593 cacgatgtattcctgtttg 47005575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 224 - 356
Target Start/End: Complemental strand, 3369400 - 3369269
Alignment:
Q  224 cttaggatagattagagtagatccacttggactgatttatcacgacgtattcccgtttgactttttcctaggtcaagtctattatctccccaatctttgt 323  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||  |||||||||||||   || |||| ||||| ||||  | || |||||||||||||    
T  3369400 cttaggatagattaaagtagatccacttagactgctttatcacgctgtattcccgtttg-ggttatcctgggtcaggtcttatgtccccccaatctttgt 3369302  T
Q  324 atctttgtcgttttatttaatatattttctgtt 356  Q
    |||||| || |||||||||||||||||||||||    
T  3369301 atctttttctttttatttaatatattttctgtt 3369269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 25 - 163
Target Start/End: Original strand, 30084107 - 30084243
Alignment:
Q  25 tgaaatccttgaatgcttatacttgactatgtgttattatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaat 124  Q
    ||||||| |||||||||| || |||| |||   ||||||||||||| ||||||||||||  ||||||||||| ||| || |||||||||||| | |||||    
T  30084107 tgaaatctttgaatgctt-tatttgattatactttattatgtggaatattatctaacctt-agtggtcgtttcgttgactgcctgcctatttttatgaat 30084204  T
Q  125 gggtatacagcgtgcatgactgattttcttattgcttgt 163  Q
    ||||| || |||||||||||||||| |||||||||||||    
T  30084205 gggtagacggcgtgcatgactgattatcttattgcttgt 30084243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 206 - 353
Target Start/End: Original strand, 28421453 - 28421600
Alignment:
Q  206 tgtgactagtgaatttttcttaggatagattagagtagatccacttggactgatttatcacgacgtattcccgtttgactttttcctaggtcaagtctat 305  Q
    ||||| |||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||  ||||| ||| |||| || ||||||||||| |||||     
T  28421453 tgtgattagtgaatttttgttatgatagattagagtagatccacttggactgttttatcacgttgtatttccgcttgagttattcctaggtcaggtctaa 28421552  T
Q  306 tatctccccaatctttgtatctttgtcgttttatttaatatattttct 353  Q
    | | || | | ||||| ||| | | |  ||||||||||||||||||||    
T  28421553 tgtttctctagtctttatatatctttgtttttatttaatatattttct 28421600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 19978670 - 19978772
Alignment:
Q  61 ttatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggtatacagcgtgcatgactgattttcttattgct 160  Q
    |||||||||| || || ||||||||||||||||||||||| |||| |||||||||||| ||||| |||| ||  |||||| || |||| ||| |||| ||    
T  19978670 ttatgtggaatataatataacctccagtggtcgtttggttgaccgtctgcctatttgtatgaattggtagacgacgtgcaagagtgatcttcatatttct 19978769  T
Q  161 tgt 163  Q
    |||    
T  19978770 tgt 19978772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 24405344 - 24405411
Alignment:
Q  171 tttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattag 238  Q
    |||||||||| || ||||||| ||| |||||||| |||||||||||||||||| |||| |||||||||    
T  24405344 tttcgtgcccctacgcgggttcgctgagttgcgcctgtgactagtgaatttttgttagaatagattag 24405411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 85 - 163
Target Start/End: Original strand, 10711935 - 10712015
Alignment:
Q  85 cagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggtatacagcgtgcatgactgattt--tcttattgcttgt 163  Q
    ||||||| |||||||| ||||||| ||||||||||| ||||| || ||  ||||||||||||||||  |||||||||||||    
T  10711935 cagtggttgtttggttgaccgccttcctatttgtgtaaatggatagacgacgtgcatgactgattttctcttattgcttgt 10712015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 177 - 282
Target Start/End: Complemental strand, 51663792 - 51663687
Alignment:
Q  177 gcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgatttatcacgacgtattcc 276  Q
    ||||||| ||||||| |||  |||||||  |||| ||||| |||||| |||||||||||||||||   ||||||||| ||| ||||||| || |||| ||    
T  51663792 gcccgtacgcgggttcgctgggttgcgccagtgattagtgtatttttattaggatagattagagttattccacttgggctgttttatcatgatgtatccc 51663693  T
Q  277 cgtttg 282  Q
    ||||||    
T  51663692 cgtttg 51663687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 23006150 - 23006226
Alignment:
Q  199 ttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgatttatcacgacgtattc 275  Q
    |||| ||||||| |||||||||||| ||| ||||||||||| | ||||||||| ||| ||||||||| || ||||||    
T  23006150 ttgcacttgtgattagtgaatttttgttatgatagattagaatcgatccacttagaccgatttatcatgatgtattc 23006226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 30177593 - 30177660
Alignment:
Q  96 tggtttaccgcctgcctatttgtgtgaatgggtatacagcgtgcatgactgattttcttattgcttgt 163  Q
    ||||| ||||||||||||||||| |||||||||| || | ||||| || ||||| |||||||||||||    
T  30177593 tggttgaccgcctgcctatttgtatgaatgggtagacggtgtgcaggaatgattatcttattgcttgt 30177660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 7254519 - 7254471
Alignment:
Q  77 ctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatg 125  Q
    |||||| ||||||||||||||||| ||||||| ||||||||| ||||||    
T  7254519 ctaacccccagtggtcgtttggttgaccgcctacctatttgtatgaatg 7254471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 20709042 - 20708998
Alignment:
Q  160 ttgtaacttgatttcgtgcccgtatgcgggtttgctaagttgcgc 204  Q
    |||||||||||||||||||||||| ||||||| |||| |||||||    
T  20709042 ttgtaacttgatttcgtgcccgtacgcgggttcgctaggttgcgc 20708998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 17765934 - 17765867
Alignment:
Q  171 tttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattag 238  Q
    ||||||||||||| | |||||||||  ||||||   ||||||||||||||||| |||| |||||||||    
T  17765934 tttcgtgcccgtacgtgggtttgctgggttgcgtgcgtgactagtgaatttttgttagaatagattag 17765867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 19067254 - 19067187
Alignment:
Q  171 tttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattag 238  Q
    ||||||||||||| | |||||||||  ||||||   ||||||||||||||||| |||| |||||||||    
T  19067254 tttcgtgcccgtacgtgggtttgctgggttgcgtgcgtgactagtgaatttttgttagaatagattag 19067187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 24901755 - 24901813
Alignment:
Q  85 cagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggtatacagcgtgcatga 143  Q
    ||||||||||| |||| ||||||| ||||||||| |||||||||| ||  |||||||||    
T  24901755 cagtggtcgttcggttgaccgcctacctatttgtatgaatgggtagacgacgtgcatga 24901813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 353
Target Start/End: Original strand, 41907384 - 41907425
Alignment:
Q  311 ccccaatctttgtatctttgtcgttttatttaatatattttct 353  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  41907384 ccccaatctttgtatcttt-tctttttatttaatatattttct 41907425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 160 - 362
Target Start/End: Original strand, 18003832 - 18004033
Alignment:
Q  160 ttgtaacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgat 259  Q
    |||||||||| ||||| ||  ||| ||||||| |||  ||||||| | ||| ||| |||||||| ||||||||||||||||| |||| || |||||||||    
T  18003832 ttgtaacttggtttcgcgcatgtacgcgggttcgctgggttgcgcctttgattagggaatttttgttaggatagattagagttgatctacctggactgat 18003931  T
Q  260 ttatcacgacgtattcccgtttgactttttcctaggtcaagtctattatctccccaatctttgtatctttgtcgttttatttaatatattttctgttatg 359  Q
    |||||| |  |||||||||||||  || ||||| |||||| | || | || ||| | ||||||||||||| |  ||||||||||| |||||||| || ||    
T  18003932 ttatcatgttgtattcccgtttgggttattcctgggtcaaat-taatgtccccctagtctttgtatctttttatttttatttaatgtattttctattttg 18004030  T
Q  360 ctt 362  Q
    |||    
T  18004031 ctt 18004033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 24270400 - 24270274
Alignment:
Q  25 tgaaatccttgaatgcttat-acttgactatgtgttattatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaa 123  Q
    |||||||||||||||| ||| |||||| ||| | |  |||||| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||  |||    
T  24270400 tgaaatccttgaatgcatattacttgattatatctatttatgtagaatattatctaacccccagtggtcgtttggttgaccgcctgcctatttgtacgaa 24270301  T
Q  124 tgggtatacagcgtgcatgactgattt 150  Q
    ||| || || | |||||||| ||||||    
T  24270300 tggttagacggtgtgcatgattgattt 24270274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 185 - 353
Target Start/End: Complemental strand, 25140510 - 25140341
Alignment:
Q  185 gcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgatttatcacga-cgtattcccgtttga 283  Q
    ||||||||||| |||||||| | ||| ||||||| |||| |||||||| |||||||| |||||||||||| |||||||||||||  ||||| ||||||||    
T  25140510 gcgggtttgctgagttgcgcatatgattagtgaacttttgttaggataaattagagttgatccacttggattgatttatcacgattgtatttccgtttga 25140411  T
Q  284 ctttttcctaggtcaagtctattatctccccaatctttgtatctttgtcgttttatttaatatattttct 353  Q
     || |||||  |||| ||||  | |  ||||| ||| |||| || | || ||||||||| ||||||||||    
T  25140410 gttattcctgagtcaggtctcatgttcccccagtctatgtacctctttcattttatttattatattttct 25140341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 15062143 - 15062017
Alignment:
Q  1 ataagtatgtatatgtatgataaatgaaatccttgaatg-cttatacttgactatgtgttattatgtggaaaattatctaacctccagtggtcgtttggt 99  Q
    ||||||||||||| || | |||  |||||||||||| || | | ||||||| ||| | ||||||||||||| |||||||||||| ||||||| |||||||    
T  15062143 ataagtatgtatacgtgttatacttgaaatccttgactgtcatttacttgattatattttattatgtggaatattatctaaccttcagtggttgtttggt 15062044  T
Q  100 ttaccgcctgcctatttgtgtgaatgg 126  Q
    | ||||||| || |||||| |||||||    
T  15062043 tgaccgcctacccatttgtatgaatgg 15062017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 16216119 - 16216040
Alignment:
Q  47 ttgactatgtgttattatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgg 126  Q
    |||| ||| ||||||||||||||| || |||||||||||||||||||||||||| | |||||||  |||||| |||||||    
T  16216119 ttgattatatgttattatgtggaatataatctaacctccagtggtcgtttggttgatcgcctgctcatttgtatgaatgg 16216040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 353
Target Start/End: Complemental strand, 10659052 - 10658858
Alignment:
Q  160 ttgtaacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttc-ttaggatagattagagtagatccacttggactga 258  Q
    ||||||| || |||||  |||||| ||||||| ||| ||||| |  | ||| ||||||||||||  ||||||||||||||||| |||||||||| | |||    
T  10659052 ttgtaacctggtttcgaacccgtacgcgggttcgctgagttgggtctatgattagtgaattttttgttaggatagattagagttgatccacttgaattga 10658953  T
Q  259 tttatcacga-cgtattcccgtttgactttttcctaggtcaagtctattatctccccaatctttgtatctttgtcgttttatttaatatattttct 353  Q
    ||||||||||  ||||| | |||||  || |||||| |||| ||||| | || ||  | ||||||||||| | || ||||||||| ||||||||||    
T  10658952 tttatcacgattgtatttctgtttgggttattcctaagtcaggtctaatttccccatagtctttgtatctct-tctttttatttattatattttct 10658858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 23863601 - 23863535
Alignment:
Q  66 tggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggtatac 132  Q
    ||||| ||||||||||||||| ||||||||||||| || ||||| |||||| | |||||| ||||||    
T  23863601 tggaatattatctaacctccaatggtcgtttggttgactgcctggctatttctatgaatgagtatac 23863535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 177 - 282
Target Start/End: Complemental strand, 5949974 - 5949869
Alignment:
Q  177 gcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgatttatcacgacgtattcc 276  Q
    ||||||| ||||||| |||  ||||||   |||| ||||| |||||| ||||||||||||||||| | | |||||| |||  ||||||| || |||||||    
T  5949974 gcccgtacgcgggttcgcttggttgcgtcagtgattagtgtatttttgttaggatagattagagttgtttcacttgaactcttttatcatgatgtattcc 5949875  T
Q  277 cgtttg 282  Q
    ||||||    
T  5949874 cgtttg 5949869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 41939985 - 41939904
Alignment:
Q  160 ttgtaacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagt 241  Q
    ||||||| || ||||| | | ||||||||||| ||| ||||||||   ||||||||| |||||| |||||||||||||||||    
T  41939985 ttgtaacctggtttcgcgtctgtatgcgggttcgctgagttgcgccattgactagtgtatttttgttaggatagattagagt 41939904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 14442457 - 14442390
Alignment:
Q  171 tttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattag 238  Q
    ||||| |||| |||||||||||||| |||||| | |||||  | ||||||||| ||||||||||||||    
T  14442457 tttcgagcccctatgcgggtttgctgagttgcacctgtgataaatgaatttttattaggatagattag 14442390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 17124633 - 17124557
Alignment:
Q  64 tgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggtatacagcgtgca 140  Q
    |||||||  |||||||||| | ||| ||| ||||||| || | |||||||||||| |||||||||| || |||||||    
T  17124633 tgtggaatgttatctaacccctagttgtcatttggttgactgtctgcctatttgtatgaatgggtagacggcgtgca 17124557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 58 - 163
Target Start/End: Original strand, 25559324 - 25559428
Alignment:
Q  58 ttattatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggtatacagcgtgcatgactgattttcttatt 157  Q
    ||||| |||||||  |||||||| |  |||||||||||||||| ||||||| ||||||||| |||||||||| ||| ||||||||||||||||||||| |    
T  25559324 ttattttgtggaatgttatctaatcctcagtggtcgtttggtt-accgccttcctatttgtatgaatgggtagacaacgtgcatgactgattttcttaat 25559422  T
Q  158 gcttgt 163  Q
    ||||||    
T  25559423 gcttgt 25559428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 160 - 298
Target Start/End: Complemental strand, 34793240 - 34793104
Alignment:
Q  160 ttgtaacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgat 259  Q
    |||||||||| |||||||||||||  |||||| ||   |||| || | ||| || ||||||||| ||||  ||||||||||| |||||| ||||||||||    
T  34793240 ttgtaacttggtttcgtgcccgtacacgggttcgcg--gttgtgcctttgaataatgaatttttgttagagtagattagagttgatccaattggactgat 34793143  T
Q  260 ttatcacgacgtattcccgtttgactttttcctaggtca 298  Q
    |||||||||  ||||||| ||||| |||||||| |||||    
T  34793142 ttatcacgatatattcccatttgaatttttcctgggtca 34793104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 30191015 - 30191074
Alignment:
Q  58 ttattatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgt 118  Q
    ||||||||||||| || || ||||||| ||||||||||||||| |||| ||||||||||||    
T  30191015 ttattatgtggaatataatataacctc-agtggtcgtttggttgaccgtctgcctatttgt 30191074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 26058198 - 26058085
Alignment:
Q  5 gtatgtatatgtatgataaatgaaatccttgaatgcttatacttgactatgtgttattatgtggaaaattatctaacctccagtggtcgtttggtttacc 104  Q
    |||||| ||||||| |||  ||||||||||||||| |  |   ||| ||| | ||||||||||||| ||||||||||| | ||||||| ||||||| | |    
T  26058198 gtatgtgtatgtataatacttgaaatccttgaatgatattttatgattatattttattatgtggaatattatctaacccctagtggtcatttggttgatc 26058099  T
Q  105 gcctgcctatttgt 118  Q
    |||| || ||||||    
T  26058098 gcctacccatttgt 26058085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 36879224 - 36879293
Alignment:
Q  199 ttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgatttatcacga 268  Q
    |||||| | ||| |||||||||||| ||| ||||||||||  | ||||||||||||  ||||||||||||    
T  36879224 ttgcgcctatgattagtgaatttttgttaagatagattagtcttgatccacttggatcgatttatcacga 36879293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 198 - 281
Target Start/End: Complemental strand, 22193595 - 22193512
Alignment:
Q  198 gttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgatttatcacgacgtattcccgttt 281  Q
    ||||||| ||||| |||||||||||| |||||||  ||||||||||||||||||||||||||||||||||  ||||||| ||||    
T  22193595 gttgcgcctgtgattagtgaatttttgttaggatcaattagagtagatccacttggactgatttatcacggtgtattcctgttt 22193512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 18332192 - 18332283
Alignment:
Q  25 tgaaatccttgaatgcttatacttgactatgtgttattatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttg 117  Q
    |||||||||||||||||| || |||| ||||| |||||| |||||| ||||||||||  | ||||||||||||||| | ||||| ||||||||    
T  18332192 tgaaatccttgaatgcttttatttgattatgt-ttattaggtggaatattatctaacacctagtggtcgtttggttgatcgcctacctatttg 18332283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 27402008 - 27401952
Alignment:
Q  84 ccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggtatacagcgtgca 140  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||||    
T  27402008 ccagtggtcgtttggttgaccgcctgcctatttgtatgaatgggtagacagcttgca 27401952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 35114378 - 35114317
Alignment:
Q  214 gtgaatttttcttaggatagattagagtagatccacttggactgatttatcacgacgtattc 275  Q
    |||||||||| |||| ||||||||||| |||||| |||||||| ||||||||||| ||||||    
T  35114378 gtgaatttttgttagaatagattagaggagatccccttggactaatttatcacgatgtattc 35114317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 353
Target Start/End: Original strand, 38002214 - 38002409
Alignment:
Q  160 ttgtaacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtga-atttttcttaggatagattaga---gtagatccacttggac 255  Q
    |||||||||| ||||| ||||||| |||||||||||  ||||||| ||||| ||||||  ||||| |||| | |  |||||   || |||||||||||||    
T  38002214 ttgtaacttggtttcgcgcccgtacgcgggtttgctgggttgcgcctgtgattagtgatttttttgttagaacaatttagagttgtcgatccacttggac 38002313  T
Q  256 tgatttatcacgacgtattcccgtttgactttttcctaggtcaagtctattatctccccaatctttgtatctttgtcgttttatttaatatattttct 353  Q
    || ||||| |||| |||||||| ||||  ||  |||| | ||| |||||  ||  ||||| ||||||||||| | || |||||||| |||||||||||    
T  38002314 tgttttattacgatgtattcccttttgggttactcctggatcaggtcta--atgcccccagtctttgtatctctttccttttattttatatattttct 38002409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 3771039 - 3771117
Alignment:
Q  160 ttgtaacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattag 238  Q
    |||||||||||||||| ||||||| |||||||||||| |||| || || || || ||||||| | |||| |||||||||    
T  3771039 ttgtaacttgatttcgcgcccgtacgcgggtttgctaggttgtgcctgcgattaatgaatttgtattagaatagattag 3771117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 266
Target Start/End: Complemental strand, 8216629 - 8216523
Alignment:
Q  160 ttgtaacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgat 259  Q
    |||||||||| ||||  ||||||| ||||||| | |  ||||||   |||||||||| |||||| ||||||||||||||||| |  |||||| ||| |||    
T  8216629 ttgtaacttggtttcacgcccgtacgcgggttcgttgggttgcgtcagtgactagtgtatttttgttaggatagattagagttgtaccactttgacagat 8216530  T
Q  260 ttatcac 266  Q
    |||||||    
T  8216529 ttatcac 8216523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 17531440 - 17531494
Alignment:
Q  212 tagtgaatttttcttaggatagattagagtagatccacttggactgatttatcac 266  Q
    |||||||||||| ||||||||||||| |||||||  |||| || |||||||||||    
T  17531440 tagtgaatttttgttaggatagattacagtagatttacttagattgatttatcac 17531494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 36254800 - 36254853
Alignment:
Q  185 gcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattag 238  Q
    ||||||||||| |||||| |||||||  ||||||||||| |||| |||||||||    
T  36254800 gcgggtttgctgagttgcacttgtgataagtgaatttttgttagaatagattag 36254853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 296
Target Start/End: Complemental strand, 33619564 - 33619480
Alignment:
Q  212 tagtgaatttttcttaggatagattagagtagatccacttggactgatttatcacgacgtattcccgtttgactttttcctaggt 296  Q
    |||| ||||||| |||| |||||||||||| |||||||| | | |||||||||| |  ||||||  |||||| || |||||||||    
T  33619564 tagttaatttttgttagaatagattagagttgatccactagaaatgatttatcaagttgtattcttgtttgagttattcctaggt 33619480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 13934 - 14037
Alignment:
Q  25 tgaaatccttgaatgcttatacttgactatgtgttattatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaat 124  Q
    |||||||||||||| ||| || |||| ||||| ||||| ||||||| ||||||||||| | ||||||| ||||||| || |||||||||||||| |||||    
T  13934 tgaaatccttgaatacttttatttgattatgt-ttattgtgtggaatattatctaacccctagtggtcatttggttgactgcctgcctatttgtttgaat 14032  T
Q  125 gggta 129  Q
    |||||    
T  14033 gggta 14037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 13933078 - 13933012
Alignment:
Q  58 ttattatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaat 124  Q
    |||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  13933078 ttattatgtgaaatattatctaacccccagtggtcgtttggttgaccgcctgcctatttgtatgaat 13933012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 73 - 163
Target Start/End: Original strand, 10116289 - 10116379
Alignment:
Q  73 ttatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggtatacagcgtgcatgactgattttcttattgcttgt 163  Q
    |||||||||||||| ||||||||||||| |||| |||||||||||| ||||||| || |   |||||| || |||| ||||||||||||||    
T  10116289 ttatctaacctccaatggtcgtttggttgaccgtctgcctatttgtatgaatggatagaagacgtgcaagaatgatcttcttattgcttgt 10116379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 233 - 353
Target Start/End: Complemental strand, 45199459 - 45199341
Alignment:
Q  233 gattagagtagatccacttggactgatttatcacgacgtattcccgtttgactttttcctaggtcaagtctattatctcccc-aatctttgtatctttgt 331  Q
    |||||||||||||||||||| ||||||||||||||| |||||  | |||||  ||||||||||||| |||  |||| ||||| | ||||||||||||| |    
T  45199459 gattagagtagatccacttgtactgatttatcacgatgtattttcatttga-gttttcctaggtcaggtc--ttatgtcccctagtctttgtatcttttt 45199363  T
Q  332 cgttttatttaatatattttct 353  Q
    | ||||||||| ||| ||||||    
T  45199362 ctttttatttattattttttct 45199341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 12410320 - 12410374
Alignment:
Q  64 tgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgt 118  Q
    ||||||| ||||||||||| | ||||||||||||||| |||||||||||||||||    
T  12410320 tgtggaatattatctaacccctagtggtcgtttggttaaccgcctgcctatttgt 12410374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 18420801 - 18420863
Alignment:
Q  64 tgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgg 126  Q
    ||||||| ||||||||||||||||||||||||||||| |||| | |||||||||  |||||||    
T  18420801 tgtggaatattatctaacctccagtggtcgtttggttgaccgtcggcctatttgcatgaatgg 18420863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 11923957 - 11924054
Alignment:
Q  25 tgaaatccttgaatgcttatacttgactatgtgttattatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaat 124  Q
    ||||||||||||||| || || |||| ||||  ||||||||| ||| | ||||||||| ||||||||||||||||| |||  |||||||||||| |||||    
T  11923957 tgaaatccttgaatgttt-tatttgattatga-ttattatgtagaataatatctaacccccagtggtcgtttggttgacctgctgcctatttgtatgaat 11924054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 20650294 - 20650372
Alignment:
Q  160 ttgtaacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattag 238  Q
    |||||||||| ||||| ||| ||| || |||| ||| ||||||||  |||| |||||||||||| ||||||||||||||    
T  20650294 ttgtaacttggtttcgcgcctgtacgcaggttcgctgagttgcgcccgtgattagtgaatttttgttaggatagattag 20650372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 298
Target Start/End: Original strand, 21121841 - 21121977
Alignment:
Q  160 ttgtaacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatccacttggactgat 259  Q
    |||||||||| | |||  |||||||||||||| |||  |||||||| |||| ||||  |||||  ||||||||||||||||  |  |||||||||  | |    
T  21121841 ttgtaacttggtctcgcacccgtatgcgggttcgctgggttgcgctagtgattagtttattttg-ttaggatagattagagctgtaccacttggatagtt 21121939  T
Q  260 ttatcacgacgtattcccgtttgactttttcctaggtca 298  Q
    || |||||| ||||||||||||||  |||||||||||||    
T  21121940 ttttcacgatgtattcccgtttga-gttttcctaggtca 21121977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 44206856 - 44206738
Alignment:
Q  160 ttgtaacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatcca-cttggactga 258  Q
    ||||||| || ||||||||||||| | ||||| |||  ||||||| ||||| |||||  ||||| |||| |||||||||||| ||||||  |||||||      
T  44206856 ttgtaacctggtttcgtgcccgtacgtgggttcgctgggttgcgcctgtgattagtgtctttttgttagaatagattagagtcgatccattttggactat 44206757  T
Q  259 tttatcacgacgtattccc 277  Q
    ||| |||||| ||||||||    
T  44206756 tttctcacgatgtattccc 44206738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 2406369 - 2406312
Alignment:
Q  225 ttaggatagattagagtagatccacttggactgatttatcacgacgtattcccgtttg 282  Q
    ||||||||| ||||||| |||| ||||| ||||||||||||||| ||||||| |||||    
T  2406369 ttaggatagtttagagttgatcaacttgaactgatttatcacgatgtattcctgtttg 2406312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 20181894 - 20181838
Alignment:
Q  212 tagtgaatttttcttaggatagattagagtagatccacttggactgatttatcacga 268  Q
    ||||| |||||| |||||||| |||||||| | |||||||||||| |||||||||||    
T  20181894 tagtgtatttttattaggataaattagagttgttccacttggactaatttatcacga 20181838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 10330106 - 10330180
Alignment:
Q  163 taacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattag 238  Q
    ||||||| ||||||||||||| | |||||||||||||||| || ||||   |||||||||| ||| ||||||||||    
T  10330106 taacttggtttcgtgcccgtacgtgggtttgctaagttgcactcgtgatacgtgaatttttgtta-gatagattag 10330180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 20749888 - 20749943
Alignment:
Q  64 tgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtg 119  Q
    ||||||| || | |||||||| |||| |||||||||| ||||||||||||||||||    
T  20749888 tgtggaatataaactaacctcgagtgatcgtttggttgaccgcctgcctatttgtg 20749943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 44274399 - 44274473
Alignment:
Q  206 tgtgactagtgaatttttcttaggatagattagagtagatccacttggactgatttatcacgacgtattcccgttt 281  Q
    ||||| |||||||||||| |||  ||| |||| | |||||||||||||||| |||| |||||| ||||||||||||    
T  44274399 tgtgattagtgaatttttgttattataaattataatagatccacttggactaattt-tcacgatgtattcccgttt 44274473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 41421243 - 41421197
Alignment:
Q  235 ttagagtagatccacttggactgatttatcacgacgtattcccgttt 281  Q
    ||||||| ||||||||||| ||||| |||||||||||||| ||||||    
T  41421243 ttagagttgatccacttggtctgatatatcacgacgtatttccgttt 41421197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 21081753 - 21081841
Alignment:
Q  160 ttgtaacttgatttcgtgcccgtatgcgggtttgctaagttgcgcttgtgactagtgaatttttcttaggatagattagagtagatcca 248  Q
    |||||||||| ||||| || | || ||||||| |||   |||||| ||||| || ||| ||||| ||||||||||||||||| ||||||    
T  21081753 ttgtaacttggtttcgcgcgcataagcgggttcgctggattgcgcatgtgattaatgattttttgttaggatagattagagttgatcca 21081841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 53813705 - 53813649
Alignment:
Q  225 ttaggatagattagagtagatccacttggactgatttatcacgacgtattcccgttt 281  Q
    ||||||||||||||||| |  |||||||||| |||||||||||  |||| |||||||    
T  53813705 ttaggatagattagagttgtaccacttggacagatttatcacggtgtatccccgttt 53813649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 11301 - 11407
Alignment:
Q  25 tgaaatccttgaatgcttatacttgactatgtgttattatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaat 124  Q
    |||||||||||||| ||| || |||| ||||| ||||| ||||||| | ||| ||||| |||||| |||||||||| ||| ||||||||||| | |||||    
T  11301 tgaaatccttgaatacttttatttgattatgt-ttattgtgtggaatactatttaacccccagtgatcgtttggttgaccacctgcctatttatatgaat 11399  T
Q  125 gggtatac 132  Q
    ||||||||    
T  11400 gggtatac 11407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 18549 - 18668
Alignment:
Q  25 tgaaatccttgaatgcttatacttgactatgtgttattatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaat 124  Q
    |||||||||||||||||  |   ||| ||| | ||||||||||||| |||||||||||  |||||||||||||||| |||| || || |||||| |||||    
T  18549 tgaaatccttgaatgctgttttatgattatattttattatgtggaatattatctaaccctcagtggtcgtttggttgaccgtctacccatttgtatgaat 18648  T
Q  125 gg-gtatacagcgtgcatga 143  Q
    || ||| || ||||||||||    
T  18649 ggtgtaaacggcgtgcatga 18668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 28649 - 28579
Alignment:
Q  58 ttattatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggta 129  Q
    ||||||||||||  | ||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||    
T  28649 ttattatgtggattaatatctaacc-ccagtggtcgtttggttgatcgcctgcctatttgtatgaatgggta 28579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 64358 - 64413
Alignment:
Q  85 cagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggtatacagcgtgca 140  Q
    |||||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||    
T  64358 cagtggtcgtttggttgaccgcctacctatttgtatgaatgggtagacagcgtgca 64413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 71292 - 71383
Alignment:
Q  25 tgaaatccttgaatgcttatacttgactatgtgttattatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgt 118  Q
    |||||| ||||||||||| |  |||| ||| | ||||||||||||| |||||||||||  || ||||||||||||| ||||||| || ||||||    
T  71292 tgaaattcttgaatgcttct--ttgattatatcttattatgtggaatattatctaaccctcactggtcgtttggttgaccgcctacccatttgt 71383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 163
Target Start/End: Complemental strand, 201929 - 201793
Alignment:
Q  24 atgaaatccttgaatgcttatacttgactatgtgttattatgtggaaaattatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaa 123  Q
    |||| ||| ||||||||||||  |||| ||| | ||||| | ||||| | ||||||||| ||||||||||||||||| ||| ||||||||||||| ||||    
T  201929 atgagatctttgaatgcttatgtttgattatatattatt-tatggaatactatctaacc-ccagtggtcgtttggttgaccacctgcctatttgtatgaa 201832  T
Q  124 tgggtatacagcgtgcatgactgattttcttattgcttgt 163  Q
    || ||| ||| | ||||||| |||||| ||| ||||||||    
T  201831 tgagtagacaacttgcatgattgatttgctt-ttgcttgt 201793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 32413 - 32377
Alignment:
Q  312 cccaatctttgtatctttgtcgttttatttaatatat 348  Q
    |||||||||||||||||| ||||||||||||||||||    
T  32413 cccaatctttgtatctttttcgttttatttaatatat 32377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 33136 - 33071
Alignment:
Q  73 ttatctaacctccagtggtcgtttggtttaccgcctgcctatttgtgtgaatgggtatacagcgtg 138  Q
    ||||||||||   |||| |||||| ||| ||||||||||||||||| |||||||||| || |||||    
T  33136 ttatctaaccctgagtgttcgtttcgttgaccgcctgcctatttgtatgaatgggtagacggcgtg 33071  T

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